Improve handling of warnings, reorganize tests

1 files changed, 82 insertions, 0 deletions

diff --git a/R/summary_DFOP_FOCUS_C.txt b/R/summary_DFOP_FOCUS_C.txt
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+++ b/R/summary_DFOP_FOCUS_C.txt
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+mkin version used for fitting:    Dummy 0.0 for testing 
+R version used for fitting:       Dummy R version for testing 
+Date of fit:     Dummy date for testing 
+Date of summary: Dummy date for testing 
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+           time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+           * parent
+
+Model predictions using solution type analytical 
+
+Fitted using test 0 model solutions performed in test time 0 s
+
+Error model: Constant variance 
+
+Error model algorithm: OLS 
+
+Starting values for parameters to be optimised:
+         value   type
+parent_0 85.10  state
+k1        0.10 deparm
+k2        0.01 deparm
+g         0.50 deparm
+
+Starting values for the transformed parameters actually optimised:
+             value lower upper
+parent_0 85.100000  -Inf   Inf
+log_k1   -2.302585  -Inf   Inf
+log_k2   -4.605170  -Inf   Inf
+g_ilr     0.000000  -Inf   Inf
+
+Fixed parameter values:
+None
+
+Results:
+
+       AIC      BIC    logLik
+  29.02372 30.00984 -9.511861
+
+Optimised, transformed parameters with symmetric confidence intervals:
+         Estimate Std. Error   Lower   Upper
+parent_0  85.0000    0.66620 83.1500 86.8500
+log_k1    -0.7775    0.03380 -0.8713 -0.6836
+log_k2    -4.0260    0.13100 -4.3890 -3.6620
+g_ilr      1.2490    0.05811  1.0870  1.4100
+sigma      0.6962    0.16410  0.2406  1.1520
+
+Parameter correlation:
+[1] "Correlation matrix is platform dependent, not tested"
+
+Backtransformed parameters:
+Confidence intervals for internally transformed parameters are asymmetric.
+t-test (unrealistically) based on the assumption of normal distribution
+for estimators of untransformed parameters.
+         Estimate t value    Pr(>t)    Lower    Upper
+parent_0 85.00000 127.600 1.131e-08 83.15000 86.85000
+k1        0.45960  29.580 3.887e-06  0.41840  0.50480
+k2        0.01785   7.636 7.901e-04  0.01241  0.02568
+g         0.85390  83.310 6.221e-08  0.82310  0.88020
+sigma     0.69620   4.243 6.618e-03  0.24060  1.15200
+
+FOCUS Chi2 error levels in percent:
+         err.min n.optim df
+All data   2.661       4  5
+parent     2.661       4  5
+
+Estimated disappearance times:
+        DT50  DT90 DT50_k1 DT50_k2
+parent 1.887 21.25   1.508   38.83
+
+Data:
+ time variable observed predicted residual
+    0   parent     85.1    85.003  0.09726
+    1   parent     57.9    58.039 -0.13912
+    3   parent     29.9    30.054 -0.15351
+    7   parent     14.6    13.866  0.73388
+   14   parent      9.7     9.787 -0.08657
+   28   parent      6.6     7.532 -0.93205
+   63   parent      4.0     4.033 -0.03269
+   91   parent      3.9     2.447  1.45348
+  119   parent      0.6     1.484 -0.88424