diff options
| author | jranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb> | 2013-04-14 12:42:06 +0000 |
|---|---|---|
| committer | jranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb> | 2013-04-14 12:42:06 +0000 |
| commit | 6168089ac43664c10ca2dc1281c8648fbf3b35a9 (patch) | |
| tree | 1ac85698d15ccdf4b70c97fa8b88641c98f236c8 /TODO | |
| parent | 19537674a67c7b52ceb310bd47c0c2c04830ffb8 (diff) | |
- Update the TODO list, setting some requirements for version 1.0
- Check that initial values specified using parms.ini are actually needed for the model, stop otherwise
- List all formation fractions in the same place in the summary, also if they were fitted in the model
- Include an FOMC model coupled to two metabolites in the unit tests
- Some updates needed because of the above
- Update of static documentation including the vignettes
- Update of the mkin vignettes in the vignettes directory
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Diffstat (limited to 'TODO')
| -rw-r--r-- | TODO | 18 |
1 files changed, 7 insertions, 11 deletions
@@ -1,18 +1,14 @@ -Must have: -- Some more tests with coupled models with FOMC, DFOP, HS and SFORB for parent -- Some tests with SFORB for metabolites -- Make the "method" argument work again - currently it is being passed both to ode() and modFit() -- Check the contents of the parms.ini argument to mkinfit for arguments that - are not used in the model in order to avoid erroneous chi2 error level - calculations +TODO for version 1.0 +- Transfer (some?) unit tests to examples to make them more easily accessible + for the user - they will be tested during R CMD check anyway +- Let mkin call mkin_wide_to_long automatically, if observed data are suitably defined +- Think about what a user would expect from version 1.0 Nice to have: -- Calculate confidence intervals for DT50 and DT90 values when only one parameter is involved -- Add more unit tests for mkinfit - Improve choice of starting parameters, in order to avoid failure of eigenvalue based solutions due to singular matrix - Consider reverting to deSolve in case eigenvalue based solution fails due to singular matrix -- Reproduce example anaylses (L1, L2, ...) in FOCUS (2006) +- Calculate confidence intervals for DT50 and DT90 values when only one parameter is involved - Calculate transformation only DT50 values (exclude pathways to sink) as additional information -- Generate confidence intervals for DT50 and DT90 values for other cases +- Calculate DT50 values from smaller rate constant/eigenvalue of DFOP, HS and SFORB models - Document assumptions and implications of fitting method used in FME in the package vignette |