diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-05-03 19:14:15 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-05-03 19:14:15 +0200 |
| commit | 1ef7008be2a72a0847064ad9c2ddcfa16b055482 (patch) | |
| tree | ecc3f90e5d18c75aea14ad774aad9214039c0674 /docs/articles/FOCUS_D.html | |
| parent | de7b6acdd75a0f95f2a9522c22625810f4aa329a (diff) | |
Improve error model fitting
Now we have a three stage fitting process for
nonconstant error models:
- Unweighted least squares
- Only optimize the error model
- Optimize both
Static documentation rebuilt by pkgdown
Diffstat (limited to 'docs/articles/FOCUS_D.html')
| -rw-r--r-- | docs/articles/FOCUS_D.html | 42 |
1 files changed, 21 insertions, 21 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index 3ce94de7..ae895cc3 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -88,7 +88,7 @@ <h1>Example evaluation of FOCUS Example Dataset D</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2019-05-02</h4> + <h4 class="date">2019-05-03</h4> <div class="hidden name"><code>FOCUS_D.Rmd</code></div> @@ -168,8 +168,8 @@ <div class="sourceCode" id="cb11"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb11-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.49.4 ## R version used for fitting: 3.6.0 -## Date of fit: Thu May 2 18:49:13 2019 -## Date of summary: Thu May 2 18:49:14 2019 +## Date of fit: Fri May 3 19:08:45 2019 +## Date of summary: Fri May 3 19:08:46 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -177,7 +177,7 @@ ## ## Model predictions using solution type deSolve ## -## Fitted using 396 model solutions performed in 0.999 s +## Fitted using 389 model solutions performed in 0.983 s ## ## Error model: ## Constant variance @@ -216,13 +216,13 @@ ## log_k_parent_sink 6.067e-01 1.000e+00 -8.550e-02 ## log_k_parent_m1 -6.372e-02 -8.550e-02 1.000e+00 ## log_k_m1_sink -1.688e-01 -6.252e-01 4.731e-01 -## sigma -3.368e-07 3.365e-08 8.420e-07 +## sigma 1.164e-09 -8.908e-10 1.652e-08 ## log_k_m1_sink sigma -## parent_0 -1.688e-01 -3.368e-07 -## log_k_parent_sink -6.252e-01 3.365e-08 -## log_k_parent_m1 4.731e-01 8.420e-07 -## log_k_m1_sink 1.000e+00 1.958e-08 -## sigma 1.958e-08 1.000e+00 +## parent_0 -1.688e-01 1.164e-09 +## log_k_parent_sink -6.252e-01 -8.908e-10 +## log_k_parent_m1 4.731e-01 1.652e-08 +## log_k_m1_sink 1.000e+00 -1.340e-10 +## sigma -1.340e-10 1.000e+00 ## ## Backtransformed parameters: ## Confidence intervals for internally transformed parameters are asymmetric. @@ -258,10 +258,10 @@ ## 0 parent 102.04 99.59848 2.442e+00 ## 1 parent 93.50 90.23787 3.262e+00 ## 1 parent 92.50 90.23787 2.262e+00 -## 3 parent 63.23 74.07319 -1.084e+01 -## 3 parent 68.99 74.07319 -5.083e+00 -## 7 parent 52.32 49.91206 2.408e+00 -## 7 parent 55.13 49.91206 5.218e+00 +## 3 parent 63.23 74.07320 -1.084e+01 +## 3 parent 68.99 74.07320 -5.083e+00 +## 7 parent 52.32 49.91207 2.408e+00 +## 7 parent 55.13 49.91207 5.218e+00 ## 14 parent 27.27 25.01257 2.257e+00 ## 14 parent 26.64 25.01257 1.627e+00 ## 21 parent 11.50 12.53462 -1.035e+00 @@ -271,23 +271,23 @@ ## 50 parent 0.69 0.71624 -2.624e-02 ## 50 parent 0.63 0.71624 -8.624e-02 ## 75 parent 0.05 0.06074 -1.074e-02 -## 75 parent 0.06 0.06074 -7.381e-04 +## 75 parent 0.06 0.06074 -7.382e-04 ## 1 m1 4.84 4.80296 3.704e-02 ## 1 m1 5.64 4.80296 8.370e-01 ## 3 m1 12.91 13.02400 -1.140e-01 ## 3 m1 12.96 13.02400 -6.400e-02 ## 7 m1 22.97 25.04476 -2.075e+00 ## 7 m1 24.47 25.04476 -5.748e-01 -## 14 m1 41.69 36.69003 5.000e+00 -## 14 m1 33.21 36.69003 -3.480e+00 +## 14 m1 41.69 36.69002 5.000e+00 +## 14 m1 33.21 36.69002 -3.480e+00 ## 21 m1 44.37 41.65310 2.717e+00 ## 21 m1 46.44 41.65310 4.787e+00 ## 35 m1 41.22 43.31312 -2.093e+00 ## 35 m1 37.95 43.31312 -5.363e+00 -## 50 m1 41.19 41.21832 -2.832e-02 -## 50 m1 40.01 41.21832 -1.208e+00 -## 75 m1 40.09 36.44704 3.643e+00 -## 75 m1 33.85 36.44704 -2.597e+00 +## 50 m1 41.19 41.21831 -2.831e-02 +## 50 m1 40.01 41.21831 -1.208e+00 +## 75 m1 40.09 36.44703 3.643e+00 +## 75 m1 33.85 36.44703 -2.597e+00 ## 100 m1 31.04 31.98163 -9.416e-01 ## 100 m1 33.13 31.98163 1.148e+00 ## 120 m1 25.15 28.78984 -3.640e+00 |