Prepare release of v1.2.4v1.2.4

- Update DESCRIPTION
- Update Makefile to document how to use R-patched
- Remove markup from two URLs to avoid CRAN NOTE
- Switch two vignettes from html_document to html_vignette to save space
  in the docs directory, also avoiding a CRAN NOTE
- Complete rebuild of pkgdown docs for release

1 files changed, 10 insertions, 10 deletions

diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index 0d2f56f5..19367c68 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -33,7 +33,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.4</span>
       </span>
     </div>
 
@@ -135,7 +135,7 @@ D</h1>
 Ranke</h4>
             
             <h4 data-toc-skip class="date">Last change 31 January 2019
-(rebuilt 2023-04-20)</h4>
+(rebuilt 2023-05-19)</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/FOCUS_D.rmd" class="external-link"><code>vignettes/FOCUS_D.rmd</code></a></small>
       <div class="hidden name"><code>FOCUS_D.rmd</code></div>
@@ -237,10 +237,10 @@ the <code>mkinparplot</code> function.</p>
 <code>summary</code> method for <code>mkinfit</code> objects.</p>
 <div class="sourceCode" id="cb11"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">fit</span><span class="op">)</span></span></code></pre></div>
-<pre><code><span><span class="co">## mkin version used for fitting:    1.2.3 </span></span>
-<span><span class="co">## R version used for fitting:       4.2.3 </span></span>
-<span><span class="co">## Date of fit:     Thu Apr 20 07:37:14 2023 </span></span>
-<span><span class="co">## Date of summary: Thu Apr 20 07:37:14 2023 </span></span>
+<pre><code><span><span class="co">## mkin version used for fitting:    1.2.4 </span></span>
+<span><span class="co">## R version used for fitting:       4.3.0 </span></span>
+<span><span class="co">## Date of fit:     Fri May 19 09:20:23 2023 </span></span>
+<span><span class="co">## Date of summary: Fri May 19 09:20:23 2023 </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Equations:</span></span>
 <span><span class="co">## d_parent/dt = - k_parent * parent</span></span>
@@ -248,7 +248,7 @@ the <code>mkinparplot</code> function.</p>
 <span><span class="co">## </span></span>
 <span><span class="co">## Model predictions using solution type analytical </span></span>
 <span><span class="co">## </span></span>
-<span><span class="co">## Fitted using 401 model solutions performed in 0.047 s</span></span>
+<span><span class="co">## Fitted using 401 model solutions performed in 0.048 s</span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Error model: Constant variance </span></span>
 <span><span class="co">## </span></span>
@@ -292,10 +292,10 @@ the <code>mkinparplot</code> function.</p>
 <span><span class="co">## Parameter correlation:</span></span>
 <span><span class="co">##                   parent_0 log_k_parent   log_k_m1 f_parent_qlogis      sigma</span></span>
 <span><span class="co">## parent_0         1.000e+00    5.174e-01 -1.688e-01      -5.471e-01 -1.172e-06</span></span>
-<span><span class="co">## log_k_parent     5.174e-01    1.000e+00 -3.263e-01      -5.426e-01 -8.483e-07</span></span>
-<span><span class="co">## log_k_m1        -1.688e-01   -3.263e-01  1.000e+00       7.478e-01  8.205e-07</span></span>
+<span><span class="co">## log_k_parent     5.174e-01    1.000e+00 -3.263e-01      -5.426e-01 -8.479e-07</span></span>
+<span><span class="co">## log_k_m1        -1.688e-01   -3.263e-01  1.000e+00       7.478e-01  8.211e-07</span></span>
 <span><span class="co">## f_parent_qlogis -5.471e-01   -5.426e-01  7.478e-01       1.000e+00  1.305e-06</span></span>
-<span><span class="co">## sigma           -1.172e-06   -8.483e-07  8.205e-07       1.305e-06  1.000e+00</span></span>
+<span><span class="co">## sigma           -1.172e-06   -8.479e-07  8.211e-07       1.305e-06  1.000e+00</span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Backtransformed parameters:</span></span>
 <span><span class="co">## Confidence intervals for internally transformed parameters are asymmetric.</span></span>