Static documentation rebuilt by pkgdown::build_site()

1 files changed, 48 insertions, 1 deletions

diff --git a/docs/articles/FOCUS_L.R b/docs/articles/FOCUS_L.R
index 858d483e..063e3d57 100644
--- a/docs/articles/FOCUS_L.R
+++ b/docs/articles/FOCUS_L.R
@@ -1,3 +1,50 @@
+## ---- include = FALSE----------------------------------------------------
+library(knitr)
+opts_chunk$set(tidy = FALSE, cache = FALSE)
+
+## ------------------------------------------------------------------------
+library("mkin", quietly = TRUE)
+FOCUS_2006_L1 = data.frame(
+  t = rep(c(0, 1, 2, 3, 5, 7, 14, 21, 30), each = 2),
+  parent = c(88.3, 91.4, 85.6, 84.5, 78.9, 77.6,
+             72.0, 71.9, 50.3, 59.4, 47.0, 45.1,
+             27.7, 27.3, 10.0, 10.4, 2.9, 4.0))
+FOCUS_2006_L1_mkin <- mkin_wide_to_long(FOCUS_2006_L1)
+
+## ------------------------------------------------------------------------
+m.L1.SFO <- mkinfit("SFO", FOCUS_2006_L1_mkin, quiet = TRUE)
+summary(m.L1.SFO)
+
+## ----fig.width = 6, fig.height = 5---------------------------------------
+plot(m.L1.SFO, show_errmin = TRUE, main = "FOCUS L1 - SFO")
+
+## ----fig.width = 6, fig.height = 5---------------------------------------
+mkinresplot(m.L1.SFO, ylab = "Observed", xlab = "Time")
+
+## ----fig.width = 6, fig.height = 5---------------------------------------
+m.L1.FOMC <- mkinfit("FOMC", FOCUS_2006_L1_mkin, quiet=TRUE)
+plot(m.L1.FOMC, show_errmin = TRUE, main = "FOCUS L1 - FOMC")
+summary(m.L1.FOMC, data = FALSE)
+
+## ------------------------------------------------------------------------
+FOCUS_2006_L2 = data.frame(
+  t = rep(c(0, 1, 3, 7, 14, 28), each = 2),
+  parent = c(96.1, 91.8, 41.4, 38.7,
+             19.3, 22.3, 4.6, 4.6,
+             2.6, 1.2, 0.3, 0.6))
+FOCUS_2006_L2_mkin <- mkin_wide_to_long(FOCUS_2006_L2)
+
+## ----fig.width = 7, fig.height = 6---------------------------------------
+m.L2.SFO <- mkinfit("SFO", FOCUS_2006_L2_mkin, quiet=TRUE)
+plot(m.L2.SFO, show_residuals = TRUE, show_errmin = TRUE,
+     main = "FOCUS L2 - SFO")
+
+## ----fig.width = 7, fig.height = 6---------------------------------------
+m.L2.FOMC <- mkinfit("FOMC", FOCUS_2006_L2_mkin, quiet = TRUE)
+plot(m.L2.FOMC, show_residuals = TRUE,
+     main = "FOCUS L2 - FOMC")
+summary(m.L2.FOMC, data = FALSE)
+
 ## ----fig.width = 7, fig.height = 6---------------------------------------
 m.L2.DFOP <- mkinfit("DFOP", FOCUS_2006_L2_mkin, quiet = TRUE)
 plot(m.L2.DFOP, show_residuals = TRUE, show_errmin = TRUE,
@@ -29,7 +76,7 @@ FOCUS_2006_L4_mkin <- mkin_wide_to_long(FOCUS_2006_L4)
 ## ----fig.height = 6------------------------------------------------------
 # Only use one core here, not to offend the CRAN checks
 mm.L4 <- mmkin(c("SFO", "FOMC"), cores = 1,
-               list("FOCUS L4" = FOCUS_2006_L4_mkin), 
+               list("FOCUS L4" = FOCUS_2006_L4_mkin),
                quiet = TRUE)
 plot(mm.L4)