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authorJohannes Ranke <jranke@uni-bremen.de>2017-11-16 17:13:35 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2017-11-16 17:13:35 +0100
commit1511ed0a775e15ec2158e22d08a4da00cdd834aa (patch)
treef75cf31b069e1c2f7e101fb323d8b2f1ef1372c8 /docs/articles/compiled_models.html
parent5a4653a14f545833ee461edb26ac7fecc2e22f60 (diff)
Use html_vignette for FOCUS_D vignette, fix addressv0.9.46.3
Static documentation articles rebuilt by pkgdown::build_articles()
Diffstat (limited to 'docs/articles/compiled_models.html')
-rw-r--r--docs/articles/compiled_models.html36
1 files changed, 12 insertions, 24 deletions
diff --git a/docs/articles/compiled_models.html b/docs/articles/compiled_models.html
index af47841b..68aa1bac 100644
--- a/docs/articles/compiled_models.html
+++ b/docs/articles/compiled_models.html
@@ -62,14 +62,7 @@
<a href="../news/index.html">News</a>
</li>
</ul>
-<ul class="nav navbar-nav navbar-right">
-<li>
- <a href="http://github.com/jranke/mkin">
- <span class="fa fa-github fa-lg"></span>
-
- </a>
-</li>
- </ul>
+<ul class="nav navbar-nav navbar-right"></ul>
</div>
<!--/.nav-collapse -->
</div>
@@ -84,7 +77,7 @@
<h1>Performance benefit by using compiled model definitions in mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2017-09-14</h4>
+ <h4 class="date">2017-11-16</h4>
</div>
@@ -98,13 +91,8 @@
<pre><code>## gcc
## "/usr/bin/gcc"</code></pre>
<p>First, we build a simple degradation model for a parent compound with one metabolite.</p>
-<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(<span class="st">"mkin"</span>)</code></pre></div>
-<pre><code>## Lade nötiges Paket: minpack.lm</code></pre>
-<pre><code>## Lade nötiges Paket: rootSolve</code></pre>
-<pre><code>## Lade nötiges Paket: inline</code></pre>
-<pre><code>## Lade nötiges Paket: methods</code></pre>
-<pre><code>## Lade nötiges Paket: parallel</code></pre>
-<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mkinmod.html">mkinmod</a></span>(
+<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(<span class="st">"mkin"</span>)
+SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mkinmod.html">mkinmod</a></span>(
<span class="dt">parent =</span> <span class="kw"><a href="../reference/mkinsub.html">mkinsub</a></span>(<span class="st">"SFO"</span>, <span class="st">"m1"</span>),
<span class="dt">m1 =</span> <span class="kw"><a href="../reference/mkinsub.html">mkinsub</a></span>(<span class="st">"SFO"</span>))</code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
@@ -127,9 +115,9 @@
}</code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.038 1.000 2.036 0
-## 1 deSolve, not compiled 3 14.822 7.273 14.824 0
-## 2 Eigenvalue based 3 2.543 1.248 2.544 0
+## 3 deSolve, compiled 3 2.029 1.000 2.028 0
+## 1 deSolve, not compiled 3 14.237 7.017 14.236 0
+## 2 Eigenvalue based 3 2.700 1.331 2.700 0
## user.child sys.child
## 3 0 0
## 1 0 0
@@ -158,14 +146,14 @@
}</code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 3.488 1.000 3.488 0
-## 1 deSolve, not compiled 3 30.604 8.774 30.600 0
+## 2 deSolve, compiled 3 3.495 1.000 3.496 0
+## 1 deSolve, not compiled 3 29.264 8.373 29.260 0
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>
-<p>Here we get a performance benefit of a factor of 9 using the version of the differential equation model compiled from C code!</p>
-<p>This vignette was built with mkin 0.9.46.1 on</p>
-<pre><code>## R version 3.4.1 (2017-06-30)
+<p>Here we get a performance benefit of a factor of 8 using the version of the differential equation model compiled from C code!</p>
+<p>This vignette was built with mkin 0.9.46.2 on</p>
+<pre><code>## R version 3.4.2 (2017-09-28)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Debian GNU/Linux 9 (stretch)</code></pre>
<pre><code>## CPU model: Intel(R) Core(TM) i7-4710MQ CPU @ 2.50GHz</code></pre>

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