diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-06-04 15:09:28 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-06-04 15:09:28 +0200 |
| commit | 95178837d3f91e84837628446b5fd468179af2b9 (patch) | |
| tree | 8b162d5a22b28b59ca9c6bb27bf8f9dfbeaefbae /docs/articles/web_only/compiled_models.html | |
| parent | 9a96391589fef9f80f9c6c4881cc48a509cb75f2 (diff) | |
Additional algorithm "d_c", more tests, docs
The new algorithm tries direct optimization of the likelihood, as well
as a three step procedure. In this way, we consistently get the
model with the highest likelihood for SFO, DFOP and HS for all 12
new test datasets.
Diffstat (limited to 'docs/articles/web_only/compiled_models.html')
| -rw-r--r-- | docs/articles/web_only/compiled_models.html | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index f296c8a4..f3062c66 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -30,7 +30,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../../index.html">mkin</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.4</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.5</span> </span> </div> @@ -88,7 +88,7 @@ <h1>Performance benefit by using compiled model definitions in mkin</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2019-05-08</h4> + <h4 class="date">2019-06-04</h4> <div class="hidden name"><code>compiled_models.Rmd</code></div> @@ -163,9 +163,9 @@ ## Warning in mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "deSolve", quiet ## = TRUE): Observations with value of zero were removed from the data</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 3 deSolve, compiled 3 3.131 1.000 3.129 0 -## 1 deSolve, not compiled 3 28.306 9.041 28.290 0 -## 2 Eigenvalue based 3 4.361 1.393 4.358 0 +## 3 deSolve, compiled 3 3.053 1.000 3.052 0 +## 1 deSolve, not compiled 3 28.457 9.321 28.442 0 +## 2 Eigenvalue based 3 4.296 1.407 4.293 0 ## user.child sys.child ## 3 0 0 ## 1 0 0 @@ -214,16 +214,16 @@ ## Warning in mkinfit(FOMC_SFO, FOCUS_2006_D, quiet = TRUE): Observations with ## value of zero were removed from the data</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 2 deSolve, compiled 3 5.023 1.000 5.021 0 -## 1 deSolve, not compiled 3 53.267 10.605 53.235 0 +## 2 deSolve, compiled 3 4.828 1.000 4.825 0 +## 1 deSolve, not compiled 3 53.153 11.009 53.125 0 ## user.child sys.child ## 2 0 0 ## 1 0 0</code></pre> <p>Here we get a performance benefit of a factor of 11 using the version of the differential equation model compiled from C code!</p> -<p>This vignette was built with mkin 0.9.49.4 on</p> +<p>This vignette was built with mkin 0.9.49.5 on</p> <pre><code>## R version 3.6.0 (2019-04-26) ## Platform: x86_64-pc-linux-gnu (64-bit) -## Running under: Debian GNU/Linux 9 (stretch)</code></pre> +## Running under: Debian GNU/Linux 10 (buster)</code></pre> <pre><code>## CPU model: AMD Ryzen 7 1700 Eight-Core Processor</code></pre> </div> </div> @@ -247,7 +247,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> </div> </footer> </div> |