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authorJohannes Ranke <jranke@uni-bremen.de>2018-11-26 09:49:58 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2018-11-26 09:49:58 +0100
commit282f88f9e28e683f524d5e05d65d8b18ab856a8d (patch)
treed4928410ba3f2d9d276e06e2149069d66aecb19c /docs/articles
parent7aaa293d43989834be53d78298629aa3d23dc9a7 (diff)
Further improvement of the logLik.mkinfit help
Static documentation rebuilt by pkgdown
Diffstat (limited to 'docs/articles')
-rw-r--r--docs/articles/FOCUS_L.html42
-rw-r--r--docs/articles/web_only/compiled_models.html12
2 files changed, 27 insertions, 27 deletions
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index 02b3f60e..4d337e72 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -110,15 +110,15 @@
<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">summary</span>(m.L1.SFO)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Mon Nov 26 09:29:29 2018
-## Date of summary: Mon Nov 26 09:29:29 2018
+## Date of fit: Mon Nov 26 09:47:23 2018
+## Date of summary: Mon Nov 26 09:47:23 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 37 model solutions performed in 0.094 s
+## Fitted with method Port using 37 model solutions performed in 0.093 s
##
## Weighting: none
##
@@ -201,15 +201,15 @@
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Mon Nov 26 09:29:30 2018
-## Date of summary: Mon Nov 26 09:29:30 2018
+## Date of fit: Mon Nov 26 09:47:25 2018
+## Date of summary: Mon Nov 26 09:47:25 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.467 s
+## Fitted with method Port using 611 model solutions performed in 1.475 s
##
## Weighting: none
##
@@ -296,15 +296,15 @@
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Mon Nov 26 09:29:31 2018
-## Date of summary: Mon Nov 26 09:29:31 2018
+## Date of fit: Mon Nov 26 09:47:26 2018
+## Date of summary: Mon Nov 26 09:47:26 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.191 s
+## Fitted with method Port using 81 model solutions performed in 0.192 s
##
## Weighting: none
##
@@ -367,8 +367,8 @@
<div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Mon Nov 26 09:29:32 2018
-## Date of summary: Mon Nov 26 09:29:32 2018
+## Date of fit: Mon Nov 26 09:47:27 2018
+## Date of summary: Mon Nov 26 09:47:27 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.828 s
+## Fitted with method Port using 336 model solutions performed in 0.831 s
##
## Weighting: none
##
@@ -459,8 +459,8 @@
<div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Mon Nov 26 09:29:33 2018
-## Date of summary: Mon Nov 26 09:29:33 2018
+## Date of fit: Mon Nov 26 09:47:28 2018
+## Date of summary: Mon Nov 26 09:47:28 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.334 s
+## Fitted with method Port using 137 model solutions performed in 0.336 s
##
## Weighting: none
##
@@ -560,15 +560,15 @@
<div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Mon Nov 26 09:29:34 2018
-## Date of summary: Mon Nov 26 09:29:34 2018
+## Date of fit: Mon Nov 26 09:47:28 2018
+## Date of summary: Mon Nov 26 09:47:29 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.108 s
+## Fitted with method Port using 46 model solutions performed in 0.107 s
##
## Weighting: none
##
@@ -620,15 +620,15 @@
<div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.6
## R version used for fitting: 3.5.1
-## Date of fit: Mon Nov 26 09:29:34 2018
-## Date of summary: Mon Nov 26 09:29:34 2018
+## Date of fit: Mon Nov 26 09:47:28 2018
+## Date of summary: Mon Nov 26 09:47:29 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.158 s
+## Fitted with method Port using 66 model solutions performed in 0.168 s
##
## Weighting: none
##
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 93c800bf..083cdb79 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -125,9 +125,9 @@
<a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.268 1.000 2.267 0
-## 1 deSolve, not compiled 3 18.698 8.244 18.690 0
-## 2 Eigenvalue based 3 2.812 1.240 2.811 0
+## 3 deSolve, compiled 3 2.264 1.000 2.263 0
+## 1 deSolve, not compiled 3 17.642 7.792 17.634 0
+## 2 Eigenvalue based 3 2.801 1.237 2.799 0
## user.child sys.child
## 3 0 0
## 1 0 0
@@ -156,12 +156,12 @@
<a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 4.032 1.000 4.028 0
-## 1 deSolve, not compiled 3 39.759 9.861 39.741 0
+## 2 deSolve, compiled 3 4.012 1.000 4.010 0
+## 1 deSolve, not compiled 3 37.606 9.373 37.589 0
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>
-<p>Here we get a performance benefit of a factor of 10 using the version of the differential equation model compiled from C code!</p>
+<p>Here we get a performance benefit of a factor of 9 using the version of the differential equation model compiled from C code!</p>
<p>This vignette was built with mkin 0.9.47.6 on</p>
<pre><code>## R version 3.5.1 (2018-07-02)
## Platform: x86_64-pc-linux-gnu (64-bit)

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