Static documentation rebuilt by pkgdown

6 files changed, 36 insertions, 36 deletions

diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index b44462aa..b03e7612 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -84,7 +84,7 @@
       <h1>Example evaluation of FOCUS Example Dataset D</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-09-18</h4>
+            <h4 class="date">2018-11-23</h4>
       
       
       <div class="hidden name"><code>FOCUS_D.Rmd</code></div>
@@ -160,10 +160,10 @@
 <p><img src="FOCUS_D_files/figure-html/plot_2-1.png" width="768"></p>
 <p>A comprehensive report of the results is obtained using the <code>summary</code> method for <code>mkinfit</code> objects.</p>
 <div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw">summary</span>(fit)</a></code></pre></div>
-<pre><code>## mkin version used for fitting:    0.9.47.5 
+<pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 17:17:43 2018 
-## Date of summary: Fri Sep 14 17:17:44 2018 
+## Date of fit:     Fri Nov 23 19:58:46 2018 
+## Date of summary: Fri Nov 23 19:58:47 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -171,7 +171,7 @@
 ## 
 ## Model predictions using solution type deSolve 
 ## 
-## Fitted with method Port using 153 model solutions performed in 0.645 s
+## Fitted with method Port using 153 model solutions performed in 0.736 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index ea49ae10..37b4306f 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -84,7 +84,7 @@
       <h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-09-18</h4>
+            <h4 class="date">2018-11-23</h4>
       
       
       <div class="hidden name"><code>FOCUS_L.Rmd</code></div>
@@ -110,15 +110,15 @@
 <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">summary</span>(m.L1.SFO)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Tue Sep 18 15:18:12 2018 
-## Date of summary: Tue Sep 18 15:18:12 2018 
+## Date of fit:     Fri Nov 23 19:58:49 2018 
+## Date of summary: Fri Nov 23 19:58:49 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.084 s
+## Fitted with method Port using 37 model solutions performed in 0.095 s
 ## 
 ## Weighting: none
 ## 
@@ -201,15 +201,15 @@
 <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Tue Sep 18 15:18:14 2018 
-## Date of summary: Tue Sep 18 15:18:14 2018 
+## Date of fit:     Fri Nov 23 19:58:51 2018 
+## Date of summary: Fri Nov 23 19:58:51 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.321 s
+## Fitted with method Port using 611 model solutions performed in 1.464 s
 ## 
 ## Weighting: none
 ## 
@@ -296,15 +296,15 @@
 <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Tue Sep 18 15:18:14 2018 
-## Date of summary: Tue Sep 18 15:18:14 2018 
+## Date of fit:     Fri Nov 23 19:58:51 2018 
+## Date of summary: Fri Nov 23 19:58:51 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.169 s
+## Fitted with method Port using 81 model solutions performed in 0.191 s
 ## 
 ## Weighting: none
 ## 
@@ -367,8 +367,8 @@
 <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Tue Sep 18 15:18:15 2018 
-## Date of summary: Tue Sep 18 15:18:15 2018 
+## Date of fit:     Fri Nov 23 19:58:52 2018 
+## Date of summary: Fri Nov 23 19:58:52 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.739 s
+## Fitted with method Port using 336 model solutions performed in 0.824 s
 ## 
 ## Weighting: none
 ## 
@@ -459,8 +459,8 @@
 <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Tue Sep 18 15:18:16 2018 
-## Date of summary: Tue Sep 18 15:18:16 2018 
+## Date of fit:     Fri Nov 23 19:58:53 2018 
+## Date of summary: Fri Nov 23 19:58:54 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.301 s
+## Fitted with method Port using 137 model solutions performed in 0.344 s
 ## 
 ## Weighting: none
 ## 
@@ -560,15 +560,15 @@
 <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Tue Sep 18 15:18:17 2018 
-## Date of summary: Tue Sep 18 15:18:17 2018 
+## Date of fit:     Fri Nov 23 19:58:54 2018 
+## Date of summary: Fri Nov 23 19:58:54 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.107 s
+## Fitted with method Port using 46 model solutions performed in 0.108 s
 ## 
 ## Weighting: none
 ## 
@@ -620,15 +620,15 @@
 <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Tue Sep 18 15:18:17 2018 
-## Date of summary: Tue Sep 18 15:18:17 2018 
+## Date of fit:     Fri Nov 23 19:58:54 2018 
+## Date of summary: Fri Nov 23 19:58:54 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.139 s
+## Fitted with method Port using 66 model solutions performed in 0.159 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index e483043b..4ead1062 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -84,7 +84,7 @@
       <h1>Introduction to mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-09-18</h4>
+            <h4 class="date">2018-11-23</h4>
       
       
       <div class="hidden name"><code>mkin.Rmd</code></div>
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index d9249f9d..8c053c10 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -84,7 +84,7 @@
       <h1>Calculation of time weighted average concentrations with mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-09-18</h4>
+            <h4 class="date">2018-11-23</h4>
       
       
       <div class="hidden name"><code>twa.Rmd</code></div>
diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html
index a3e743d1..5215e039 100644
--- a/docs/articles/web_only/FOCUS_Z.html
+++ b/docs/articles/web_only/FOCUS_Z.html
@@ -84,7 +84,7 @@
       <h1>Example evaluation of FOCUS dataset Z</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-09-18</h4>
+            <h4 class="date">2018-11-23</h4>
       
       
       <div class="hidden name"><code>FOCUS_Z.Rmd</code></div>
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 684f28cb..85efff61 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -84,7 +84,7 @@
       <h1>Performance benefit by using compiled model definitions in mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-09-18</h4>
+            <h4 class="date">2018-11-23</h4>
       
       
       <div class="hidden name"><code>compiled_models.Rmd</code></div>
@@ -125,9 +125,9 @@
 <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
 <pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.005    1.000     2.003        0
-## 1 deSolve, not compiled            3  15.480    7.721    15.474        0
-## 2      Eigenvalue based            3   2.460    1.227     2.459        0
+## 3     deSolve, compiled            3   2.284    1.000     2.282        0
+## 1 deSolve, not compiled            3  17.732    7.764    17.724        0
+## 2      Eigenvalue based            3   2.812    1.231     2.809        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -156,8 +156,8 @@
 <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
 <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   3.524     1.00     3.523    0.000
-## 1 deSolve, not compiled            3  33.021     9.37    33.001    0.004
+## 2     deSolve, compiled            3   4.029    1.000     4.026        0
+## 1 deSolve, not compiled            3  37.760    9.372    37.744        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0</code></pre>