diff options
author | Johannes Ranke <jranke@uni-bremen.de> | 2019-02-25 15:27:41 +0100 |
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committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-02-25 15:27:41 +0100 |
commit | c90fdefb4cd438ae71c613f676c2ff6631d0a7a3 (patch) | |
tree | af75932b6db1e94e1ecbfa9483b82f7f35f7afce /docs/articles | |
parent | be809ea23b256f627216958fcd90489ee0844ab8 (diff) |
Static documentation rebuilt by current pkgdown
Diffstat (limited to 'docs/articles')
-rw-r--r-- | docs/articles/FOCUS_D.html | 8 | ||||
-rw-r--r-- | docs/articles/FOCUS_L.html | 42 | ||||
-rw-r--r-- | docs/articles/index.html | 2 | ||||
-rw-r--r-- | docs/articles/mkin.html | 2 | ||||
-rw-r--r-- | docs/articles/twa.html | 2 | ||||
-rw-r--r-- | docs/articles/web_only/FOCUS_Z.html | 2 | ||||
-rw-r--r-- | docs/articles/web_only/compiled_models.html | 14 |
7 files changed, 36 insertions, 36 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index a470cdb6..0875ce0f 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -163,8 +163,8 @@ <div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 14:54:38 2019 -## Date of summary: Mon Feb 25 14:54:38 2019 +## Date of fit: Mon Feb 25 15:25:02 2019 +## Date of summary: Mon Feb 25 15:25:02 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -172,7 +172,7 @@ ## ## Model predictions using solution type deSolve ## -## Fitted with method Port using 153 model solutions performed in 0.712 s +## Fitted with method Port using 153 model solutions performed in 0.689 s ## ## Weighting: none ## @@ -292,7 +292,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index e8a81075..14827789 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -111,8 +111,8 @@ <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 14:54:40 2019 -## Date of summary: Mon Feb 25 14:54:40 2019 +## Date of fit: Mon Feb 25 15:25:04 2019 +## Date of summary: Mon Feb 25 15:25:04 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent @@ -202,15 +202,15 @@ <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 14:54:42 2019 -## Date of summary: Mon Feb 25 14:54:42 2019 +## Date of fit: Mon Feb 25 15:25:06 2019 +## Date of summary: Mon Feb 25 15:25:06 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 611 model solutions performed in 1.529 s +## Fitted with method Port using 611 model solutions performed in 1.516 s ## ## Weighting: none ## @@ -297,15 +297,15 @@ <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 14:54:42 2019 -## Date of summary: Mon Feb 25 14:54:42 2019 +## Date of fit: Mon Feb 25 15:25:06 2019 +## Date of summary: Mon Feb 25 15:25:06 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 81 model solutions performed in 0.199 s +## Fitted with method Port using 81 model solutions performed in 0.198 s ## ## Weighting: none ## @@ -368,8 +368,8 @@ <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 14:54:44 2019 -## Date of summary: Mon Feb 25 14:54:44 2019 +## Date of fit: Mon Feb 25 15:25:07 2019 +## Date of summary: Mon Feb 25 15:25:07 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -378,7 +378,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.853 s +## Fitted with method Port using 336 model solutions performed in 0.85 s ## ## Weighting: none ## @@ -460,8 +460,8 @@ <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 14:54:45 2019 -## Date of summary: Mon Feb 25 14:54:45 2019 +## Date of fit: Mon Feb 25 15:25:08 2019 +## Date of summary: Mon Feb 25 15:25:09 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -470,7 +470,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 137 model solutions performed in 0.348 s +## Fitted with method Port using 137 model solutions performed in 0.346 s ## ## Weighting: none ## @@ -561,15 +561,15 @@ <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 14:54:45 2019 -## Date of summary: Mon Feb 25 14:54:45 2019 +## Date of fit: Mon Feb 25 15:25:09 2019 +## Date of summary: Mon Feb 25 15:25:09 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 46 model solutions performed in 0.112 s +## Fitted with method Port using 46 model solutions performed in 0.111 s ## ## Weighting: none ## @@ -621,15 +621,15 @@ <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Feb 25 14:54:45 2019 -## Date of summary: Mon Feb 25 14:54:45 2019 +## Date of fit: Mon Feb 25 15:25:09 2019 +## Date of summary: Mon Feb 25 15:25:09 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 66 model solutions performed in 0.165 s +## Fitted with method Port using 66 model solutions performed in 0.164 s ## ## Weighting: none ## @@ -724,7 +724,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/articles/index.html b/docs/articles/index.html index b2b11a3f..a1c08835 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -140,7 +140,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html index bffd19dd..24520f74 100644 --- a/docs/articles/mkin.html +++ b/docs/articles/mkin.html @@ -247,7 +247,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/articles/twa.html b/docs/articles/twa.html index 83b05989..bf56eff2 100644 --- a/docs/articles/twa.html +++ b/docs/articles/twa.html @@ -136,7 +136,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html index c3ee7415..48f08bfc 100644 --- a/docs/articles/web_only/FOCUS_Z.html +++ b/docs/articles/web_only/FOCUS_Z.html @@ -321,7 +321,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index 4209d2bc..16f0cc7a 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -126,14 +126,14 @@ <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Lade nötiges Paket: rbenchmark</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 3 deSolve, compiled 3 2.394 1.000 2.388 0.004 -## 1 deSolve, not compiled 3 17.923 7.487 17.910 0.000 -## 2 Eigenvalue based 3 3.021 1.262 3.018 0.000 +## 3 deSolve, compiled 3 2.328 1.000 2.327 0 +## 1 deSolve, not compiled 3 17.641 7.578 17.633 0 +## 2 Eigenvalue based 3 2.873 1.234 2.871 0 ## user.child sys.child ## 3 0 0 ## 1 0 0 ## 2 0 0</code></pre> -<p>We see that using the compiled model is by a factor of around 7 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p> +<p>We see that using the compiled model is by a factor of around 8 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p> </div> <div id="model-that-can-not-be-solved-with-eigenvalues" class="section level2"> <h2 class="hasAnchor"> @@ -157,8 +157,8 @@ <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 2 deSolve, compiled 3 4.162 1.000 4.158 0 -## 1 deSolve, not compiled 3 37.536 9.019 37.517 0 +## 2 deSolve, compiled 3 4.126 1.000 4.125 0 +## 1 deSolve, not compiled 3 37.487 9.086 37.467 0 ## user.child sys.child ## 2 0 0 ## 1 0 0</code></pre> @@ -190,7 +190,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> |