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authorJohannes Ranke <jranke@uni-bremen.de>2019-02-25 15:27:41 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2019-02-25 15:27:41 +0100
commitc90fdefb4cd438ae71c613f676c2ff6631d0a7a3 (patch)
treeaf75932b6db1e94e1ecbfa9483b82f7f35f7afce /docs/articles
parentbe809ea23b256f627216958fcd90489ee0844ab8 (diff)
Static documentation rebuilt by current pkgdown
Diffstat (limited to 'docs/articles')
-rw-r--r--docs/articles/FOCUS_D.html8
-rw-r--r--docs/articles/FOCUS_L.html42
-rw-r--r--docs/articles/index.html2
-rw-r--r--docs/articles/mkin.html2
-rw-r--r--docs/articles/twa.html2
-rw-r--r--docs/articles/web_only/FOCUS_Z.html2
-rw-r--r--docs/articles/web_only/compiled_models.html14
7 files changed, 36 insertions, 36 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index a470cdb6..0875ce0f 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -163,8 +163,8 @@
<div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Mon Feb 25 14:54:38 2019
-## Date of summary: Mon Feb 25 14:54:38 2019
+## Date of fit: Mon Feb 25 15:25:02 2019
+## Date of summary: Mon Feb 25 15:25:02 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -172,7 +172,7 @@
##
## Model predictions using solution type deSolve
##
-## Fitted with method Port using 153 model solutions performed in 0.712 s
+## Fitted with method Port using 153 model solutions performed in 0.689 s
##
## Weighting: none
##
@@ -292,7 +292,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
</div>
</footer>
</div>
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index e8a81075..14827789 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -111,8 +111,8 @@
<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Mon Feb 25 14:54:40 2019
-## Date of summary: Mon Feb 25 14:54:40 2019
+## Date of fit: Mon Feb 25 15:25:04 2019
+## Date of summary: Mon Feb 25 15:25:04 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
@@ -202,15 +202,15 @@
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Mon Feb 25 14:54:42 2019
-## Date of summary: Mon Feb 25 14:54:42 2019
+## Date of fit: Mon Feb 25 15:25:06 2019
+## Date of summary: Mon Feb 25 15:25:06 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.529 s
+## Fitted with method Port using 611 model solutions performed in 1.516 s
##
## Weighting: none
##
@@ -297,15 +297,15 @@
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Mon Feb 25 14:54:42 2019
-## Date of summary: Mon Feb 25 14:54:42 2019
+## Date of fit: Mon Feb 25 15:25:06 2019
+## Date of summary: Mon Feb 25 15:25:06 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.199 s
+## Fitted with method Port using 81 model solutions performed in 0.198 s
##
## Weighting: none
##
@@ -368,8 +368,8 @@
<div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Mon Feb 25 14:54:44 2019
-## Date of summary: Mon Feb 25 14:54:44 2019
+## Date of fit: Mon Feb 25 15:25:07 2019
+## Date of summary: Mon Feb 25 15:25:07 2019
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -378,7 +378,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.853 s
+## Fitted with method Port using 336 model solutions performed in 0.85 s
##
## Weighting: none
##
@@ -460,8 +460,8 @@
<div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Mon Feb 25 14:54:45 2019
-## Date of summary: Mon Feb 25 14:54:45 2019
+## Date of fit: Mon Feb 25 15:25:08 2019
+## Date of summary: Mon Feb 25 15:25:09 2019
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -470,7 +470,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.348 s
+## Fitted with method Port using 137 model solutions performed in 0.346 s
##
## Weighting: none
##
@@ -561,15 +561,15 @@
<div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Mon Feb 25 14:54:45 2019
-## Date of summary: Mon Feb 25 14:54:45 2019
+## Date of fit: Mon Feb 25 15:25:09 2019
+## Date of summary: Mon Feb 25 15:25:09 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.112 s
+## Fitted with method Port using 46 model solutions performed in 0.111 s
##
## Weighting: none
##
@@ -621,15 +621,15 @@
<div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Mon Feb 25 14:54:45 2019
-## Date of summary: Mon Feb 25 14:54:45 2019
+## Date of fit: Mon Feb 25 15:25:09 2019
+## Date of summary: Mon Feb 25 15:25:09 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.165 s
+## Fitted with method Port using 66 model solutions performed in 0.164 s
##
## Weighting: none
##
@@ -724,7 +724,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
</div>
</footer>
</div>
diff --git a/docs/articles/index.html b/docs/articles/index.html
index b2b11a3f..a1c08835 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -140,7 +140,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
</div>
</footer>
</div>
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index bffd19dd..24520f74 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -247,7 +247,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
</div>
</footer>
</div>
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index 83b05989..bf56eff2 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -136,7 +136,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
</div>
</footer>
</div>
diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html
index c3ee7415..48f08bfc 100644
--- a/docs/articles/web_only/FOCUS_Z.html
+++ b/docs/articles/web_only/FOCUS_Z.html
@@ -321,7 +321,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
</div>
</footer>
</div>
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 4209d2bc..16f0cc7a 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -126,14 +126,14 @@
<a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.394 1.000 2.388 0.004
-## 1 deSolve, not compiled 3 17.923 7.487 17.910 0.000
-## 2 Eigenvalue based 3 3.021 1.262 3.018 0.000
+## 3 deSolve, compiled 3 2.328 1.000 2.327 0
+## 1 deSolve, not compiled 3 17.641 7.578 17.633 0
+## 2 Eigenvalue based 3 2.873 1.234 2.871 0
## user.child sys.child
## 3 0 0
## 1 0 0
## 2 0 0</code></pre>
-<p>We see that using the compiled model is by a factor of around 7 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p>
+<p>We see that using the compiled model is by a factor of around 8 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p>
</div>
<div id="model-that-can-not-be-solved-with-eigenvalues" class="section level2">
<h2 class="hasAnchor">
@@ -157,8 +157,8 @@
<a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 4.162 1.000 4.158 0
-## 1 deSolve, not compiled 3 37.536 9.019 37.517 0
+## 2 deSolve, compiled 3 4.126 1.000 4.125 0
+## 1 deSolve, not compiled 3 37.487 9.086 37.467 0
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>
@@ -190,7 +190,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
</div>
</footer>
</div>

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