Restore NAMESPACE

which was accidentally overwritten by pkgdown -> roxygen

3 files changed, 32 insertions, 32 deletions

diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index deab980c..9acab53a 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -94,8 +94,8 @@
 
     
     
-<p>This is just a very simple vignette showing how to fit a degradation model for a parent compound with one transformation product using <code>mkin</code>. After loading the library we look a the data. We have observed concentrations in the column named <code>value</code> at the times specified in column <code>time</code> for the two observed variables named <code>parent</code> and <code>m1</code>.</p>
-<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(<span class="st">"mkin"</span>, <span class="dt">quietly =</span> <span class="ot">TRUE</span>)</a>
+<p>This is just a very simple vignette showing how to fit a degradation model for a parent compound with one transformation product using <code>mkin</code>. After loading the library we look at the data. We have observed concentrations in the column named <code>value</code> at the times specified in column <code>time</code> for the two observed variables named <code>parent</code> and <code>m1</code>.</p>
+<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(mkin, <span class="dt">quietly =</span> <span class="ot">TRUE</span>)</a>
 <a class="sourceLine" id="cb1-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/print">print</a></span>(FOCUS_<span class="dv">2006</span>_D)</a></code></pre></div>
 <pre><code>##      name time  value
 ## 1  parent    0  99.46
@@ -161,10 +161,10 @@
 <p><img src="FOCUS_D_files/figure-html/plot_2-1.png" width="768"></p>
 <p>A comprehensive report of the results is obtained using the <code>summary</code> method for <code>mkinfit</code> objects.</p>
 <div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div>
-<pre><code>## mkin version used for fitting:    0.9.47.6 
-## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:46 2018 
-## Date of summary: Fri Nov 23 19:58:47 2018 
+<pre><code>## mkin version used for fitting:    0.9.47.5 
+## R version used for fitting:       3.5.2 
+## Date of fit:     Thu Jan 31 16:52:37 2019 
+## Date of summary: Thu Jan 31 16:52:38 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -172,7 +172,7 @@
 ## 
 ## Model predictions using solution type deSolve 
 ## 
-## Fitted with method Port using 153 model solutions performed in 0.736 s
+## Fitted with method Port using 153 model solutions performed in 0.695 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index b53ab0d0..e3ca9aff 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -111,8 +111,8 @@
 <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:40 2019 
-## Date of summary: Thu Jan 31 15:43:40 2019 
+## Date of fit:     Thu Jan 31 16:52:39 2019 
+## Date of summary: Thu Jan 31 16:52:39 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
@@ -202,15 +202,15 @@
 <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:42 2019 
-## Date of summary: Thu Jan 31 15:43:42 2019 
+## Date of fit:     Thu Jan 31 16:52:41 2019 
+## Date of summary: Thu Jan 31 16:52:41 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.502 s
+## Fitted with method Port using 611 model solutions performed in 1.49 s
 ## 
 ## Weighting: none
 ## 
@@ -297,15 +297,15 @@
 <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:42 2019 
-## Date of summary: Thu Jan 31 15:43:42 2019 
+## Date of fit:     Thu Jan 31 16:52:42 2019 
+## Date of summary: Thu Jan 31 16:52:42 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.195 s
+## Fitted with method Port using 81 model solutions performed in 0.198 s
 ## 
 ## Weighting: none
 ## 
@@ -368,8 +368,8 @@
 <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:43 2019 
-## Date of summary: Thu Jan 31 15:43:43 2019 
+## Date of fit:     Thu Jan 31 16:52:43 2019 
+## Date of summary: Thu Jan 31 16:52:43 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -378,7 +378,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.836 s
+## Fitted with method Port using 336 model solutions performed in 0.839 s
 ## 
 ## Weighting: none
 ## 
@@ -460,8 +460,8 @@
 <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:44 2019 
-## Date of summary: Thu Jan 31 15:43:45 2019 
+## Date of fit:     Thu Jan 31 16:52:44 2019 
+## Date of summary: Thu Jan 31 16:52:44 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -470,7 +470,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.34 s
+## Fitted with method Port using 137 model solutions performed in 0.341 s
 ## 
 ## Weighting: none
 ## 
@@ -561,15 +561,15 @@
 <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:45 2019 
-## Date of summary: Thu Jan 31 15:43:45 2019 
+## Date of fit:     Thu Jan 31 16:52:44 2019 
+## Date of summary: Thu Jan 31 16:52:45 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.109 s
+## Fitted with method Port using 46 model solutions performed in 0.11 s
 ## 
 ## Weighting: none
 ## 
@@ -621,15 +621,15 @@
 <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:45 2019 
-## Date of summary: Thu Jan 31 15:43:45 2019 
+## Date of fit:     Thu Jan 31 16:52:45 2019 
+## Date of summary: Thu Jan 31 16:52:45 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.163 s
+## Fitted with method Port using 66 model solutions performed in 0.162 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index d7d76b49..08bb9b44 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -126,9 +126,9 @@
 <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
 <pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.331    1.000     2.330        0
-## 1 deSolve, not compiled            3  17.369    7.451    17.360        0
-## 2      Eigenvalue based            3   2.878    1.235     2.876        0
+## 3     deSolve, compiled            3   2.353    1.000     2.352        0
+## 1 deSolve, not compiled            3  17.619    7.488    17.609        0
+## 2      Eigenvalue based            3   2.899    1.232     2.898        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -157,8 +157,8 @@
 <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
 <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   4.120    1.000     4.116        0
-## 1 deSolve, not compiled            3  37.011    8.983    36.993        0
+## 2     deSolve, compiled            3   4.180    1.000     4.177        0
+## 1 deSolve, not compiled            3  37.331    8.931    37.312        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0</code></pre>