diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2018-09-14 17:20:20 +0200 | 
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2018-09-14 17:45:46 +0200 | 
| commit | b2cbfc35e4c2b3f8dbb2e9d83ab1f4b358427896 (patch) | |
| tree | 65e737d3d79cc5875f18822e1cbc26a680b9a244 /docs/articles | |
| parent | 70d158c4dd919f4f77bc12f8ace333d29d249b79 (diff) | |
Update NEWS
Static documentation rebuilt by pkgdown
Diffstat (limited to 'docs/articles')
| -rw-r--r-- | docs/articles/FOCUS_D.html | 6 | ||||
| -rw-r--r-- | docs/articles/FOCUS_L.html | 38 | ||||
| -rw-r--r-- | docs/articles/web_only/compiled_models.html | 12 | 
3 files changed, 28 insertions, 28 deletions
| diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index 6dde02d4..a90cb7fb 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -162,8 +162,8 @@  <div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw">summary</span>(fit)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.47.5   ## R version used for fitting:       3.5.1  -## Date of fit:     Fri Sep 14 16:50:31 2018  -## Date of summary: Fri Sep 14 16:50:31 2018  +## Date of fit:     Fri Sep 14 17:17:43 2018  +## Date of summary: Fri Sep 14 17:17:44 2018   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -171,7 +171,7 @@  ##   ## Model predictions using solution type deSolve   ##  -## Fitted with method Port using 153 model solutions performed in 0.728 s +## Fitted with method Port using 153 model solutions performed in 0.645 s  ##   ## Weighting: none  ##  diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index 1087c0ed..8b06f072 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -110,15 +110,15 @@  <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">summary</span>(m.L1.SFO)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.47.5   ## R version used for fitting:       3.5.1  -## Date of fit:     Fri Sep 14 16:54:49 2018  -## Date of summary: Fri Sep 14 16:54:49 2018  +## Date of fit:     Fri Sep 14 17:43:07 2018  +## Date of summary: Fri Sep 14 17:43:07 2018   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 37 model solutions performed in 0.088 s +## Fitted with method Port using 37 model solutions performed in 0.091 s  ##   ## Weighting: none  ##  @@ -201,15 +201,15 @@  <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.47.5   ## R version used for fitting:       3.5.1  -## Date of fit:     Fri Sep 14 16:54:51 2018  -## Date of summary: Fri Sep 14 16:54:51 2018  +## Date of fit:     Fri Sep 14 17:43:09 2018  +## Date of summary: Fri Sep 14 17:43:09 2018   ##   ## Equations:  ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 611 model solutions performed in 1.349 s +## Fitted with method Port using 611 model solutions performed in 1.398 s  ##   ## Weighting: none  ##  @@ -296,8 +296,8 @@  <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.47.5   ## R version used for fitting:       3.5.1  -## Date of fit:     Fri Sep 14 16:54:51 2018  -## Date of summary: Fri Sep 14 16:54:51 2018  +## Date of fit:     Fri Sep 14 17:43:10 2018  +## Date of summary: Fri Sep 14 17:43:10 2018   ##   ## Equations:  ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent @@ -367,8 +367,8 @@  <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.47.5   ## R version used for fitting:       3.5.1  -## Date of fit:     Fri Sep 14 16:54:52 2018  -## Date of summary: Fri Sep 14 16:54:52 2018  +## Date of fit:     Fri Sep 14 17:43:11 2018  +## Date of summary: Fri Sep 14 17:43:11 2018   ##   ## Equations:  ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -377,7 +377,7 @@  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 336 model solutions performed in 0.754 s +## Fitted with method Port using 336 model solutions performed in 0.782 s  ##   ## Weighting: none  ##  @@ -459,8 +459,8 @@  <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.47.5   ## R version used for fitting:       3.5.1  -## Date of fit:     Fri Sep 14 16:54:53 2018  -## Date of summary: Fri Sep 14 16:54:53 2018  +## Date of fit:     Fri Sep 14 17:43:12 2018  +## Date of summary: Fri Sep 14 17:43:12 2018   ##   ## Equations:  ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -560,15 +560,15 @@  <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.47.5   ## R version used for fitting:       3.5.1  -## Date of fit:     Fri Sep 14 16:54:54 2018  -## Date of summary: Fri Sep 14 16:54:54 2018  +## Date of fit:     Fri Sep 14 17:43:12 2018  +## Date of summary: Fri Sep 14 17:43:12 2018   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 46 model solutions performed in 0.098 s +## Fitted with method Port using 46 model solutions performed in 0.106 s  ##   ## Weighting: none  ##  @@ -620,15 +620,15 @@  <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.47.5   ## R version used for fitting:       3.5.1  -## Date of fit:     Fri Sep 14 16:54:54 2018  -## Date of summary: Fri Sep 14 16:54:54 2018  +## Date of fit:     Fri Sep 14 17:43:12 2018  +## Date of summary: Fri Sep 14 17:43:12 2018   ##   ## Equations:  ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 66 model solutions performed in 0.153 s +## Fitted with method Port using 66 model solutions performed in 0.15 s  ##   ## Weighting: none  ##  diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index e941bea3..0d91a50c 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -125,9 +125,9 @@  <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>  <pre><code>## Lade nötiges Paket: rbenchmark</code></pre>  <pre><code>##                    test replications elapsed relative user.self sys.self -## 3     deSolve, compiled            3   2.120    1.000     2.118    0.000 -## 1 deSolve, not compiled            3  17.195    8.111    17.187    0.000 -## 2      Eigenvalue based            3   2.589    1.221     2.582    0.004 +## 3     deSolve, compiled            3   2.174    1.000     2.172        0 +## 1 deSolve, not compiled            3  16.745    7.702    16.737        0 +## 2      Eigenvalue based            3   2.652    1.220     2.650        0  ##   user.child sys.child  ## 3          0         0  ## 1          0         0 @@ -156,12 +156,12 @@  <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>  <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>  <pre><code>##                    test replications elapsed relative user.self sys.self -## 2     deSolve, compiled            3   3.761    1.000     3.758    0.000 -## 1 deSolve, not compiled            3  36.462    9.695    36.441    0.004 +## 2     deSolve, compiled            3   4.012    1.000     4.010        0 +## 1 deSolve, not compiled            3  35.620    8.878    35.604        0  ##   user.child sys.child  ## 2          0         0  ## 1          0         0</code></pre> -<p>Here we get a performance benefit of a factor of 10 using the version of the differential equation model compiled from C code!</p> +<p>Here we get a performance benefit of a factor of 9 using the version of the differential equation model compiled from C code!</p>  <p>This vignette was built with mkin 0.9.47.5 on</p>  <pre><code>## R version 3.5.1 (2018-07-02)  ## Platform: x86_64-pc-linux-gnu (64-bit) | 
