diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-02-25 15:27:41 +0100 | 
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-02-25 15:27:41 +0100 | 
| commit | c90fdefb4cd438ae71c613f676c2ff6631d0a7a3 (patch) | |
| tree | af75932b6db1e94e1ecbfa9483b82f7f35f7afce /docs/articles | |
| parent | be809ea23b256f627216958fcd90489ee0844ab8 (diff) | |
Static documentation rebuilt by current pkgdown
Diffstat (limited to 'docs/articles')
| -rw-r--r-- | docs/articles/FOCUS_D.html | 8 | ||||
| -rw-r--r-- | docs/articles/FOCUS_L.html | 42 | ||||
| -rw-r--r-- | docs/articles/index.html | 2 | ||||
| -rw-r--r-- | docs/articles/mkin.html | 2 | ||||
| -rw-r--r-- | docs/articles/twa.html | 2 | ||||
| -rw-r--r-- | docs/articles/web_only/FOCUS_Z.html | 2 | ||||
| -rw-r--r-- | docs/articles/web_only/compiled_models.html | 14 | 
7 files changed, 36 insertions, 36 deletions
| diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index a470cdb6..0875ce0f 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -163,8 +163,8 @@  <div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.48.1   ## R version used for fitting:       3.5.2  -## Date of fit:     Mon Feb 25 14:54:38 2019  -## Date of summary: Mon Feb 25 14:54:38 2019  +## Date of fit:     Mon Feb 25 15:25:02 2019  +## Date of summary: Mon Feb 25 15:25:02 2019   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -172,7 +172,7 @@  ##   ## Model predictions using solution type deSolve   ##  -## Fitted with method Port using 153 model solutions performed in 0.712 s +## Fitted with method Port using 153 model solutions performed in 0.689 s  ##   ## Weighting: none  ##  @@ -292,7 +292,7 @@  </div>  <div class="pkgdown"> -  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> +  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>  </div>        </footer>  </div> diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index e8a81075..14827789 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -111,8 +111,8 @@  <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.48.1   ## R version used for fitting:       3.5.2  -## Date of fit:     Mon Feb 25 14:54:40 2019  -## Date of summary: Mon Feb 25 14:54:40 2019  +## Date of fit:     Mon Feb 25 15:25:04 2019  +## Date of summary: Mon Feb 25 15:25:04 2019   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent @@ -202,15 +202,15 @@  <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.48.1   ## R version used for fitting:       3.5.2  -## Date of fit:     Mon Feb 25 14:54:42 2019  -## Date of summary: Mon Feb 25 14:54:42 2019  +## Date of fit:     Mon Feb 25 15:25:06 2019  +## Date of summary: Mon Feb 25 15:25:06 2019   ##   ## Equations:  ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 611 model solutions performed in 1.529 s +## Fitted with method Port using 611 model solutions performed in 1.516 s  ##   ## Weighting: none  ##  @@ -297,15 +297,15 @@  <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.48.1   ## R version used for fitting:       3.5.2  -## Date of fit:     Mon Feb 25 14:54:42 2019  -## Date of summary: Mon Feb 25 14:54:42 2019  +## Date of fit:     Mon Feb 25 15:25:06 2019  +## Date of summary: Mon Feb 25 15:25:06 2019   ##   ## Equations:  ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 81 model solutions performed in 0.199 s +## Fitted with method Port using 81 model solutions performed in 0.198 s  ##   ## Weighting: none  ##  @@ -368,8 +368,8 @@  <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.48.1   ## R version used for fitting:       3.5.2  -## Date of fit:     Mon Feb 25 14:54:44 2019  -## Date of summary: Mon Feb 25 14:54:44 2019  +## Date of fit:     Mon Feb 25 15:25:07 2019  +## Date of summary: Mon Feb 25 15:25:07 2019   ##   ## Equations:  ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -378,7 +378,7 @@  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 336 model solutions performed in 0.853 s +## Fitted with method Port using 336 model solutions performed in 0.85 s  ##   ## Weighting: none  ##  @@ -460,8 +460,8 @@  <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.48.1   ## R version used for fitting:       3.5.2  -## Date of fit:     Mon Feb 25 14:54:45 2019  -## Date of summary: Mon Feb 25 14:54:45 2019  +## Date of fit:     Mon Feb 25 15:25:08 2019  +## Date of summary: Mon Feb 25 15:25:09 2019   ##   ## Equations:  ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -470,7 +470,7 @@  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 137 model solutions performed in 0.348 s +## Fitted with method Port using 137 model solutions performed in 0.346 s  ##   ## Weighting: none  ##  @@ -561,15 +561,15 @@  <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.48.1   ## R version used for fitting:       3.5.2  -## Date of fit:     Mon Feb 25 14:54:45 2019  -## Date of summary: Mon Feb 25 14:54:45 2019  +## Date of fit:     Mon Feb 25 15:25:09 2019  +## Date of summary: Mon Feb 25 15:25:09 2019   ##   ## Equations:  ## d_parent/dt = - k_parent_sink * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 46 model solutions performed in 0.112 s +## Fitted with method Port using 46 model solutions performed in 0.111 s  ##   ## Weighting: none  ##  @@ -621,15 +621,15 @@  <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>  <pre><code>## mkin version used for fitting:    0.9.48.1   ## R version used for fitting:       3.5.2  -## Date of fit:     Mon Feb 25 14:54:45 2019  -## Date of summary: Mon Feb 25 14:54:45 2019  +## Date of fit:     Mon Feb 25 15:25:09 2019  +## Date of summary: Mon Feb 25 15:25:09 2019   ##   ## Equations:  ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent  ##   ## Model predictions using solution type analytical   ##  -## Fitted with method Port using 66 model solutions performed in 0.165 s +## Fitted with method Port using 66 model solutions performed in 0.164 s  ##   ## Weighting: none  ##  @@ -724,7 +724,7 @@  </div>  <div class="pkgdown"> -  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> +  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>  </div>        </footer>  </div> diff --git a/docs/articles/index.html b/docs/articles/index.html index b2b11a3f..a1c08835 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -140,7 +140,7 @@  </div>  <div class="pkgdown"> -  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> +  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>  </div>        </footer>     </div> diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html index bffd19dd..24520f74 100644 --- a/docs/articles/mkin.html +++ b/docs/articles/mkin.html @@ -247,7 +247,7 @@  </div>  <div class="pkgdown"> -  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> +  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>  </div>        </footer>  </div> diff --git a/docs/articles/twa.html b/docs/articles/twa.html index 83b05989..bf56eff2 100644 --- a/docs/articles/twa.html +++ b/docs/articles/twa.html @@ -136,7 +136,7 @@  </div>  <div class="pkgdown"> -  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> +  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>  </div>        </footer>  </div> diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html index c3ee7415..48f08bfc 100644 --- a/docs/articles/web_only/FOCUS_Z.html +++ b/docs/articles/web_only/FOCUS_Z.html @@ -321,7 +321,7 @@  </div>  <div class="pkgdown"> -  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> +  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>  </div>        </footer>  </div> diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index 4209d2bc..16f0cc7a 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -126,14 +126,14 @@  <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>  <pre><code>## Lade nötiges Paket: rbenchmark</code></pre>  <pre><code>##                    test replications elapsed relative user.self sys.self -## 3     deSolve, compiled            3   2.394    1.000     2.388    0.004 -## 1 deSolve, not compiled            3  17.923    7.487    17.910    0.000 -## 2      Eigenvalue based            3   3.021    1.262     3.018    0.000 +## 3     deSolve, compiled            3   2.328    1.000     2.327        0 +## 1 deSolve, not compiled            3  17.641    7.578    17.633        0 +## 2      Eigenvalue based            3   2.873    1.234     2.871        0  ##   user.child sys.child  ## 3          0         0  ## 1          0         0  ## 2          0         0</code></pre> -<p>We see that using the compiled model is by a factor of around 7 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p> +<p>We see that using the compiled model is by a factor of around 8 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs.</p>  </div>  <div id="model-that-can-not-be-solved-with-eigenvalues" class="section level2">  <h2 class="hasAnchor"> @@ -157,8 +157,8 @@  <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>  <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>  <pre><code>##                    test replications elapsed relative user.self sys.self -## 2     deSolve, compiled            3   4.162    1.000     4.158        0 -## 1 deSolve, not compiled            3  37.536    9.019    37.517        0 +## 2     deSolve, compiled            3   4.126    1.000     4.125        0 +## 1 deSolve, not compiled            3  37.487    9.086    37.467        0  ##   user.child sys.child  ## 2          0         0  ## 1          0         0</code></pre> @@ -190,7 +190,7 @@  </div>  <div class="pkgdown"> -  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> +  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>  </div>        </footer>  </div> | 
