Release date, update pkgdown development docs

1 files changed, 71 insertions, 69 deletions

diff --git a/docs/dev/articles/prebuilt/2022_dmta_parent.html b/docs/dev/articles/prebuilt/2022_dmta_parent.html
index 92259add..45a925b3 100644
--- a/docs/dev/articles/prebuilt/2022_dmta_parent.html
+++ b/docs/dev/articles/prebuilt/2022_dmta_parent.html
@@ -34,7 +34,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.5</span>
       </span>
     </div>
 
@@ -136,7 +136,7 @@ with residue data on dimethenamid and dimethenamid-P</h1>
 Ranke</h4>
             
             <h4 data-toc-skip class="date">Last change on 5 January
-2023, last compiled on 16 April 2023</h4>
+2023, last compiled on 19 Mai 2023</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_dmta_parent.rmd" class="external-link"><code>vignettes/prebuilt/2022_dmta_parent.rmd</code></a></small>
       <div class="hidden name"><code>2022_dmta_parent.rmd</code></div>
@@ -155,7 +155,7 @@ FOMC, DFOP and HS can be fitted with the mkin package.</p>
 173340 (Application of nonlinear hierarchical models to the kinetic
 evaluation of chemical degradation data) of the German Environment
 Agency carried out in 2022 and 2023.</p>
-<p>The mkin package is used in version 1.2.3. It contains the test data
+<p>The mkin package is used in version 1.2.5. It contains the test data
 and the functions used in the evaluations. The <code>saemix</code>
 package is used as a backend for fitting the NLHM, but is also loaded to
 make the convergence plot function available.</p>
@@ -1287,10 +1287,10 @@ Plot of the final NLHM DFOP fit
 <div class="sourceCode" id="cb14"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_saem_dfop_tc_no_ranef_k2</span><span class="op">)</span></span></code></pre></div>
 <pre><code>saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:51 2023 
-Date of summary: Sat Jan 28 11:22:52 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:27 2023 
+Date of summary: Fri May 19 18:14:28 2023 
 
 Equations:
 d_DMTA/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -1302,7 +1302,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 3.74 s
+Fitted in 4.477 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Two-component variance function 
@@ -1463,10 +1463,10 @@ Hierarchical mkin fit of the SFO model with error model const
 </caption>
 <pre><code>
 saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:44 2023 
-Date of summary: Sat Jan 28 11:23:57 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:19 2023 
+Date of summary: Fri May 19 18:15:34 2023 
 
 Equations:
 d_DMTA/dt = - k_DMTA * DMTA
@@ -1476,7 +1476,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 0.982 s
+Fitted in 1.091 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Constant variance 
@@ -1535,10 +1535,10 @@ Hierarchical mkin fit of the SFO model with error model tc
 </caption>
 <pre><code>
 saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:46 2023 
-Date of summary: Sat Jan 28 11:23:57 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:21 2023 
+Date of summary: Fri May 19 18:15:34 2023 
 
 Equations:
 d_DMTA/dt = - k_DMTA * DMTA
@@ -1548,7 +1548,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 2.39 s
+Fitted in 2.517 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Two-component variance function 
@@ -1609,10 +1609,10 @@ Hierarchical mkin fit of the FOMC model with error model const
 </caption>
 <pre><code>
 saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:45 2023 
-Date of summary: Sat Jan 28 11:23:57 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:20 2023 
+Date of summary: Fri May 19 18:15:34 2023 
 
 Equations:
 d_DMTA/dt = - (alpha/beta) * 1/((time/beta) + 1) * DMTA
@@ -1622,7 +1622,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 1.552 s
+Fitted in 1.25 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Constant variance 
@@ -1686,10 +1686,10 @@ Hierarchical mkin fit of the FOMC model with error model tc
 </caption>
 <pre><code>
 saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:46 2023 
-Date of summary: Sat Jan 28 11:23:57 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:21 2023 
+Date of summary: Fri May 19 18:15:34 2023 
 
 Equations:
 d_DMTA/dt = - (alpha/beta) * 1/((time/beta) + 1) * DMTA
@@ -1699,7 +1699,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 2.764 s
+Fitted in 2.666 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Two-component variance function 
@@ -1765,10 +1765,10 @@ Hierarchical mkin fit of the DFOP model with error model const
 </caption>
 <pre><code>
 saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:45 2023 
-Date of summary: Sat Jan 28 11:23:57 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:20 2023 
+Date of summary: Fri May 19 18:15:34 2023 
 
 Equations:
 d_DMTA/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -1780,7 +1780,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 1.649 s
+Fitted in 1.639 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Constant variance 
@@ -1849,10 +1849,10 @@ Hierarchical mkin fit of the DFOP model with error model tc
 </caption>
 <pre><code>
 saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:46 2023 
-Date of summary: Sat Jan 28 11:23:57 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:22 2023 
+Date of summary: Fri May 19 18:15:34 2023 
 
 Equations:
 d_DMTA/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -1864,7 +1864,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 3.288 s
+Fitted in 3.435 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Two-component variance function 
@@ -1935,10 +1935,10 @@ Hierarchical mkin fit of the HS model with error model const
 </caption>
 <pre><code>
 saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:45 2023 
-Date of summary: Sat Jan 28 11:23:57 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:20 2023 
+Date of summary: Fri May 19 18:15:34 2023 
 
 Equations:
 d_DMTA/dt = - ifelse(time &lt;= tb, k1, k2) * DMTA
@@ -1948,7 +1948,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 2.006 s
+Fitted in 1.946 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Constant variance 
@@ -2017,10 +2017,10 @@ Hierarchical mkin fit of the HS model with error model tc
 </caption>
 <pre><code>
 saemix version used for fitting:      3.2 
-mkin version used for pre-fitting:  1.2.2 
-R version used for fitting:         4.2.2 
-Date of fit:     Sat Jan 28 11:22:46 2023 
-Date of summary: Sat Jan 28 11:23:57 2023 
+mkin version used for pre-fitting:  1.2.5 
+R version used for fitting:         4.3.0 
+Date of fit:     Fri May 19 18:14:22 2023 
+Date of summary: Fri May 19 18:15:34 2023 
 
 Equations:
 d_DMTA/dt = - ifelse(time &lt;= tb, k1, k2) * DMTA
@@ -2030,7 +2030,7 @@ Data:
 
 Model predictions using solution type analytical 
 
-Fitted in 3.267 s
+Fitted in 3.626 s
 Using 300, 100 iterations and 9 chains
 
 Variance model: Two-component variance function 
@@ -2144,13 +2144,13 @@ Convergence plot for the NLHM HS fit with two-component error
 <div class="section level3">
 <h3 id="session-info">Session info<a class="anchor" aria-label="anchor" href="#session-info"></a>
 </h3>
-<pre><code>R version 4.2.2 Patched (2022-11-10 r83330)
+<pre><code>R version 4.3.0 (2023-04-21)
 Platform: x86_64-pc-linux-gnu (64-bit)
-Running under: Debian GNU/Linux bookworm/sid
+Running under: Debian GNU/Linux 12 (bookworm)
 
 Matrix products: default
-BLAS:   /usr/lib/x86_64-linux-gnu/openblas-serial/libblas.so.3
-LAPACK: /usr/lib/x86_64-linux-gnu/openblas-serial/libopenblas-r0.3.21.so
+BLAS:   /usr/lib/x86_64-linux-gnu/openblas-serial/libblas.so.3 
+LAPACK: /usr/lib/x86_64-linux-gnu/openblas-serial/libopenblas-r0.3.21.so;  LAPACK version 3.11.0
 
 locale:
  [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C              
@@ -2160,35 +2160,37 @@ locale:
  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
 [11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       
 
+time zone: Europe/Berlin
+tzcode source: system (glibc)
+
 attached base packages:
 [1] parallel  stats     graphics  grDevices utils     datasets  methods  
 [8] base     
 
 other attached packages:
-[1] saemix_3.2 npde_3.3   knitr_1.41 mkin_1.2.2
+[1] saemix_3.2 npde_3.3   knitr_1.42 mkin_1.2.5
 
 loaded via a namespace (and not attached):
- [1] deSolve_1.34      zoo_1.8-11        tidyselect_1.2.0  xfun_0.35        
- [5] bslib_0.4.2       purrr_1.0.0       lattice_0.20-45   colorspace_2.0-3 
- [9] vctrs_0.5.1       generics_0.1.3    htmltools_0.5.4   yaml_2.3.6       
-[13] utf8_1.2.2        rlang_1.0.6       pkgdown_2.0.7     jquerylib_0.1.4  
-[17] pillar_1.8.1      glue_1.6.2        DBI_1.1.3         lifecycle_1.0.3  
-[21] stringr_1.5.0     munsell_0.5.0     gtable_0.3.1      ragg_1.2.4       
-[25] codetools_0.2-18  memoise_2.0.1     evaluate_0.19     fastmap_1.1.0    
-[29] lmtest_0.9-40     fansi_1.0.3       highr_0.9         scales_1.2.1     
-[33] cachem_1.0.6      desc_1.4.2        jsonlite_1.8.4    systemfonts_1.0.4
-[37] fs_1.5.2          textshaping_0.3.6 gridExtra_2.3     ggplot2_3.4.0    
-[41] digest_0.6.31     stringi_1.7.8     dplyr_1.0.10      grid_4.2.2       
-[45] rprojroot_2.0.3   cli_3.5.0         tools_4.2.2       magrittr_2.0.3   
-[49] sass_0.4.4        tibble_3.1.8      pkgconfig_2.0.3   assertthat_0.2.1 
-[53] rmarkdown_2.19    R6_2.5.1          mclust_6.0.0      nlme_3.1-161     
-[57] compiler_4.2.2   </code></pre>
+ [1] sass_0.4.6        utf8_1.2.3        generics_0.1.3    stringi_1.7.12   
+ [5] lattice_0.21-8    digest_0.6.31     magrittr_2.0.3    evaluate_0.21    
+ [9] grid_4.3.0        fastmap_1.1.1     rprojroot_2.0.3   jsonlite_1.8.4   
+[13] DBI_1.1.3         mclust_6.0.0      gridExtra_2.3     purrr_1.0.1      
+[17] fansi_1.0.4       scales_1.2.1      codetools_0.2-19  textshaping_0.3.6
+[21] jquerylib_0.1.4   cli_3.6.1         rlang_1.1.1       munsell_0.5.0    
+[25] cachem_1.0.8      yaml_2.3.7        tools_4.3.0       memoise_2.0.1    
+[29] dplyr_1.1.2       colorspace_2.1-0  ggplot2_3.4.2     vctrs_0.6.2      
+[33] R6_2.5.1          zoo_1.8-12        lifecycle_1.0.3   stringr_1.5.0    
+[37] fs_1.6.2          ragg_1.2.5        pkgconfig_2.0.3   desc_1.4.2       
+[41] pkgdown_2.0.7     bslib_0.4.2       pillar_1.9.0      gtable_0.3.3     
+[45] glue_1.6.2        systemfonts_1.0.4 highr_0.10        xfun_0.39        
+[49] tibble_3.2.1      lmtest_0.9-40     tidyselect_1.2.0  htmltools_0.5.5  
+[53] nlme_3.1-162      rmarkdown_2.21    compiler_4.3.0   </code></pre>
 </div>
 <div class="section level3">
 <h3 id="hardware-info">Hardware info<a class="anchor" aria-label="anchor" href="#hardware-info"></a>
 </h3>
 <pre><code>CPU model: AMD Ryzen 9 7950X 16-Core Processor</code></pre>
-<pre><code>MemTotal:       64940452 kB</code></pre>
+<pre><code>MemTotal:       64925476 kB</code></pre>
 </div>
 </div>
   </div>