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authorJohannes Ranke <jranke@uni-bremen.de>2020-05-27 06:06:08 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-05-27 06:06:08 +0200
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+<meta property="og:title" content="Function to calculate endpoints for further use from kinetic models fitted
+with mkinfit — endpoints" />
+<meta property="og:description" content="This function calculates DT50 and DT90 values as well as formation fractions
+from kinetic models fitted with mkinfit. If the SFORB model was specified
+for one of the parents or metabolites, the Eigenvalues are returned. These
+are equivalent to the rate constants of the DFOP model, but with the
+advantage that the SFORB model can also be used for metabolites." />
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+ <h1>Function to calculate endpoints for further use from kinetic models fitted
+with mkinfit</h1>
+ <small class="dont-index">Source: <a href='http://github.com/jranke/mkin/blob/master/R/endpoints.R'><code>R/endpoints.R</code></a></small>
+ <div class="hidden name"><code>endpoints.Rd</code></div>
+ </div>
+
+ <div class="ref-description">
+ <p>This function calculates DT50 and DT90 values as well as formation fractions
+from kinetic models fitted with mkinfit. If the SFORB model was specified
+for one of the parents or metabolites, the Eigenvalues are returned. These
+are equivalent to the rate constants of the DFOP model, but with the
+advantage that the SFORB model can also be used for metabolites.</p>
+ </div>
+
+ <pre class="usage"><span class='fu'>endpoints</span>(<span class='no'>fit</span>)</pre>
+
+ <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
+ <table class="ref-arguments">
+ <colgroup><col class="name" /><col class="desc" /></colgroup>
+ <tr>
+ <th>fit</th>
+ <td><p>An object of class <code><a href='mkinfit.html'>mkinfit</a></code> or
+<code><a href='nlme.mmkin.html'>nlme.mmkin</a></code></p></td>
+ </tr>
+ </table>
+
+ <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+
+ <p>A list with a matrix of dissipation times named distimes,
+and, if applicable, a vector of formation fractions named ff
+and, if the SFORB model was in use, a vector of eigenvalues
+of these SFORB models, equivalent to DFOP rate constants</p>
+ <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
+
+ <p>The function is used internally by <code><a href='summary.mkinfit.html'>summary.mkinfit</a></code>.</p>
+
+ <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
+ <pre class="examples"><div class='input'>
+ <span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='st'>"FOMC"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
+ <span class='fu'>endpoints</span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; $distimes
+#&gt; DT50 DT90 DT50back
+#&gt; parent 1.785233 15.1479 4.559973
+#&gt; </div><div class='input'> <span class='co'># \dontrun{</span>
+ <span class='no'>fit_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='st'>"SFORB"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
+ <span class='fu'>endpoints</span>(<span class='no'>fit_2</span>)</div><div class='output co'>#&gt; $ff
+#&gt; parent_free_sink
+#&gt; 1
+#&gt;
+#&gt; $SFORB
+#&gt; parent_b1 parent_b2
+#&gt; 0.4595574 0.0178488
+#&gt;
+#&gt; $distimes
+#&gt; DT50 DT90 DT50_parent_b1 DT50_parent_b2
+#&gt; parent 1.886925 21.25106 1.508293 38.83438
+#&gt; </div><div class='input'> # }
+
+</div></pre>
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