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authorJohannes Ranke <jranke@uni-bremen.de>2022-08-10 16:04:48 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-08-10 16:04:48 +0200
commitfcef764f3688b01a4c6e92915ed68c5e54bc165f (patch)
tree7d5f0b43485d2e99e1e0ea999d0ce47b6914839d /docs/dev/reference/endpoints.html
parentbc8ce24677e953e003f7904564b7767537e01ca2 (diff)
parent6178249bbb5e9de7cb7f34287ee7de28a68fed6c (diff)
Merge branch 'v1.1.2'
Diffstat (limited to 'docs/dev/reference/endpoints.html')
-rw-r--r--docs/dev/reference/endpoints.html40
1 files changed, 23 insertions, 17 deletions
diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index a472b054..ed72ec47 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -23,7 +23,7 @@ advantage that the SFORB model can also be used for metabolites."><meta name="ro
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.0</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.2</span>
</span>
</div>
@@ -32,7 +32,7 @@ advantage that the SFORB model can also be used for metabolites."><meta name="ro
<a href="../reference/index.html">Functions and data</a>
</li>
<li class="dropdown">
- <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
Articles
<span class="caret"></span>
@@ -47,6 +47,9 @@ advantage that the SFORB model can also be used for metabolites."><meta name="ro
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
+ <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ </li>
+ <li>
<a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
</li>
<li>
@@ -95,21 +98,24 @@ advantage that the SFORB model can also be used for metabolites.</p>
</div>
<div id="ref-usage">
- <div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">endpoints</span><span class="op">(</span><span class="va">fit</span><span class="op">)</span></code></pre></div>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">endpoints</span><span class="op">(</span><span class="va">fit</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>fit</dt>
-<dd><p>An object of class <a href="mkinfit.html">mkinfit</a>, <a href="nlme.mmkin.html">nlme.mmkin</a>, <a href="saem.html">saem.mmkin</a> or
-<a href="nlmixr.mmkin.html">nlmixr.mmkin</a>. Or another object that has list components
+<dd><p>An object of class <a href="mkinfit.html">mkinfit</a>, <a href="nlme.mmkin.html">nlme.mmkin</a> or <a href="saem.html">saem.mmkin</a>,
+or another object that has list components
mkinmod containing an <a href="mkinmod.html">mkinmod</a> degradation model, and two numeric vectors,
bparms.optim and bparms.fixed, that contain parameter values
for that model.</p></dd>
+
</dl></div>
<div id="value">
<h2>Value</h2>
- <p>A list with a matrix of dissipation times named distimes,
+
+
+<p>A list with a matrix of dissipation times named distimes,
and, if applicable, a vector of formation fractions named ff
and, if the SFORB model was in use, a vector of eigenvalues
of these SFORB models, equivalent to DFOP rate constants</p>
@@ -131,22 +137,22 @@ HS and DFOP, as well as from Eigenvalues b1 and b2 of any SFORB models</p>
<div id="ref-examples">
<h2>Examples</h2>
- <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"></span>
-<span class="r-in"> <span class="va">fit</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"FOMC"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
-<span class="r-in"> <span class="fu">endpoints</span><span class="op">(</span><span class="va">fit</span><span class="op">)</span></span>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
+<span class="r-in"><span> <span class="va">fit</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"FOMC"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="fu">endpoints</span><span class="op">(</span><span class="va">fit</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $distimes</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DT50 DT90 DT50back</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent 1.785233 15.1479 4.559973</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-in"> <span class="co"># \dontrun{</span></span>
-<span class="r-in"> <span class="va">fit_2</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"DFOP"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
-<span class="r-in"> <span class="fu">endpoints</span><span class="op">(</span><span class="va">fit_2</span><span class="op">)</span></span>
+<span class="r-in"><span> <span class="co"># \dontrun{</span></span></span>
+<span class="r-in"><span> <span class="va">fit_2</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"DFOP"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="fu">endpoints</span><span class="op">(</span><span class="va">fit_2</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $distimes</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DT50 DT90 DT50back DT50_k1 DT50_k2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent 1.886925 21.25106 6.397207 1.508293 38.83438</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-in"> <span class="va">fit_3</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"SFORB"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
-<span class="r-in"> <span class="fu">endpoints</span><span class="op">(</span><span class="va">fit_3</span><span class="op">)</span></span>
+<span class="r-in"><span> <span class="va">fit_3</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"SFORB"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="fu">endpoints</span><span class="op">(</span><span class="va">fit_3</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ff</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent_free </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 </span>
@@ -159,8 +165,8 @@ HS and DFOP, as well as from Eigenvalues b1 and b2 of any SFORB models</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> DT50 DT90 DT50back DT50_parent_b1 DT50_parent_b2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent 1.886925 21.25106 6.397208 1.508293 38.83438</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-in"> <span class="co"># }</span></span>
-<span class="r-in"></span>
+<span class="r-in"><span> <span class="co"># }</span></span></span>
+<span class="r-in"><span></span></span>
</code></pre></div>
</div>
</div>
@@ -175,7 +181,7 @@ HS and DFOP, as well as from Eigenvalues b1 and b2 of any SFORB models</p>
</div>
<div class="pkgdown">
- <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.2.</p>
+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
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