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authorJohannes Ranke <jranke@uni-bremen.de>2022-11-24 09:02:26 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-11-24 09:02:26 +0100
commitaf7c6de4db9981ac814362c441fbac22c8faa2d7 (patch)
tree33c2963936ce6c38abe6533afcce3994a08d4ba9 /docs/dev/reference/mkin_long_to_wide.html
parent8e953c409e0020ea7e7c2a5121019c42cb66dde4 (diff)
Start online docs of the development version
Diffstat (limited to 'docs/dev/reference/mkin_long_to_wide.html')
-rw-r--r--docs/dev/reference/mkin_long_to_wide.html233
1 files changed, 90 insertions, 143 deletions
diff --git a/docs/dev/reference/mkin_long_to_wide.html b/docs/dev/reference/mkin_long_to_wide.html
index 6246fbe2..3e55885f 100644
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@@ -74,23 +19,21 @@ variable and several dependent variables as columns." />
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- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.3.9000</span>
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@@ -100,48 +43,50 @@ variable and several dependent variables as columns." />
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
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- <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ </li>
+ <li>
+ <a href="../articles/web_only/multistart.html">Short demo of the multistart method</a>
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<a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
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+ <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ </li>
+ <li>
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- <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+ <a href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
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+ <a href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
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<div class="col-md-9 contents">
<div class="page-header">
<h1>Convert a dataframe from long to wide format</h1>
- <small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/mkin_long_to_wide.R'><code>R/mkin_long_to_wide.R</code></a></small>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/mkin_long_to_wide.R" class="external-link"><code>R/mkin_long_to_wide.R</code></a></small>
<div class="hidden name"><code>mkin_long_to_wide.Rd</code></div>
</div>
@@ -151,87 +96,89 @@ observed value, and converts it into a dataframe with one independent
variable and several dependent variables as columns.</p>
</div>
- <pre class="usage"><span class='fu'>mkin_long_to_wide</span><span class='op'>(</span><span class='va'>long_data</span>, time <span class='op'>=</span> <span class='st'>"time"</span>, outtime <span class='op'>=</span> <span class='st'>"time"</span><span class='op'>)</span></pre>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">mkin_long_to_wide</span><span class="op">(</span><span class="va">long_data</span>, time <span class="op">=</span> <span class="st">"time"</span>, outtime <span class="op">=</span> <span class="st">"time"</span><span class="op">)</span></span></code></pre></div>
+ </div>
- <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
- <table class="ref-arguments">
- <colgroup><col class="name" /><col class="desc" /></colgroup>
- <tr>
- <th>long_data</th>
- <td><p>The dataframe must contain one variable called "time" with
+ <div id="arguments">
+ <h2>Arguments</h2>
+ <dl><dt>long_data</dt>
+<dd><p>The dataframe must contain one variable called "time" with
the time values specified by the <code>time</code> argument, one column called
"name" with the grouping of the observed values, and finally one column of
-observed values called "value".</p></td>
- </tr>
- <tr>
- <th>time</th>
- <td><p>The name of the time variable in the long input data.</p></td>
- </tr>
- <tr>
- <th>outtime</th>
- <td><p>The name of the time variable in the wide output data.</p></td>
- </tr>
- </table>
-
- <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
-
- <p>Dataframe in wide format.</p>
- <h2 class="hasAnchor" id="author"><a class="anchor" href="#author"></a>Author</h2>
+observed values called "value".</p></dd>
+
+
+<dt>time</dt>
+<dd><p>The name of the time variable in the long input data.</p></dd>
+
+
+<dt>outtime</dt>
+<dd><p>The name of the time variable in the wide output data.</p></dd>
+
+</dl></div>
+ <div id="value">
+ <h2>Value</h2>
+
+<p>Dataframe in wide format.</p>
+ </div>
+ <div id="author">
+ <h2>Author</h2>
<p>Johannes Ranke</p>
+ </div>
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'>
-<span class='fu'>mkin_long_to_wide</span><span class='op'>(</span><span class='va'>FOCUS_2006_D</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; time parent m1
-#&gt; 1 0 99.46 0.00
-#&gt; 2 0 102.04 0.00
-#&gt; 3 1 93.50 4.84
-#&gt; 4 1 92.50 5.64
-#&gt; 5 3 63.23 12.91
-#&gt; 6 3 68.99 12.96
-#&gt; 7 7 52.32 22.97
-#&gt; 8 7 55.13 24.47
-#&gt; 9 14 27.27 41.69
-#&gt; 10 14 26.64 33.21
-#&gt; 11 21 11.50 44.37
-#&gt; 12 21 11.64 46.44
-#&gt; 13 35 2.85 41.22
-#&gt; 14 35 2.91 37.95
-#&gt; 15 50 0.69 41.19
-#&gt; 16 50 0.63 40.01
-#&gt; 17 75 0.05 40.09
-#&gt; 18 75 0.06 33.85
-#&gt; 19 100 NA 31.04
-#&gt; 20 100 NA 33.13
-#&gt; 21 120 NA 25.15
-#&gt; 22 120 NA 33.31</div><div class='input'>
-</div></pre>
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="fu">mkin_long_to_wide</span><span class="op">(</span><span class="va">FOCUS_2006_D</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> time parent m1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 0 99.46 0.00</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 0 102.04 0.00</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 1 93.50 4.84</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 1 92.50 5.64</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 3 63.23 12.91</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 3 68.99 12.96</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 7 52.32 22.97</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 7 55.13 24.47</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 9 14 27.27 41.69</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 10 14 26.64 33.21</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 11 21 11.50 44.37</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 12 21 11.64 46.44</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 13 35 2.85 41.22</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 14 35 2.91 37.95</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 15 50 0.69 41.19</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 16 50 0.63 40.01</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 17 75 0.05 40.09</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 18 75 0.06 33.85</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 19 100 NA 31.04</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 20 100 NA 33.13</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 21 120 NA 25.15</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 22 120 NA 33.31</span>
+<span class="r-in"><span></span></span>
+</code></pre></div>
+ </div>
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