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authorJohannes Ranke <jranke@uni-bremen.de>2021-07-27 18:22:01 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2021-07-27 18:22:01 +0200
commit0b754ffa91b9496bdd2f892cf3ca2bd887028dea (patch)
tree7d9926c53f6f6a5d09ce69f6e2dfaeacceb70475 /docs/dev/reference/mkinmod.html
parentdf716686122872fc148977e7ec4b51f6dc8332bd (diff)
Fix dimethenamid vignette problems and update docs
Diffstat (limited to 'docs/dev/reference/mkinmod.html')
-rw-r--r--docs/dev/reference/mkinmod.html12
1 files changed, 4 insertions, 8 deletions
diff --git a/docs/dev/reference/mkinmod.html b/docs/dev/reference/mkinmod.html
index 413f0ae1..e57e7062 100644
--- a/docs/dev/reference/mkinmod.html
+++ b/docs/dev/reference/mkinmod.html
@@ -44,9 +44,7 @@
variable, specifying the corresponding submodel as well as outgoing pathways
(see examples).
Print mkinmod objects in a way that the user finds his way to get to its
-components.
-This is a convenience function to set up the lists used as arguments for
-mkinmod." />
+components." />
<meta name="robots" content="noindex">
@@ -78,7 +76,7 @@ mkinmod." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.3.9000</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.0</span>
</span>
</div>
@@ -155,8 +153,6 @@ variable, specifying the corresponding submodel as well as outgoing pathways
(see examples).</p>
<p>Print mkinmod objects in a way that the user finds his way to get to its
components.</p>
-<p>This is a convenience function to set up the lists used as arguments for
-<code>mkinmod</code>.</p>
</div>
<pre class="usage"><span class='fu'>mkinmod</span><span class='op'>(</span>
@@ -348,7 +344,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media</p>
parent <span class='op'>=</span> <span class='fu'>mkinsub</span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"m1"</span>, full_name <span class='op'>=</span> <span class='st'>"Test compound"</span><span class='op'>)</span>,
m1 <span class='op'>=</span> <span class='fu'>mkinsub</span><span class='op'>(</span><span class='st'>"SFO"</span>, full_name <span class='op'>=</span> <span class='st'>"Metabolite M1"</span><span class='op'>)</span>,
name <span class='op'>=</span> <span class='st'>"SFO_SFO"</span>, dll_dir <span class='op'>=</span> <span class='va'>DLL_dir</span>, unload <span class='op'>=</span> <span class='cn'>TRUE</span>, overwrite <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; <span class='message'>Copied DLL from /tmp/Rtmp92fCb2/file133ad522561845.so to /home/jranke/.local/share/mkin/SFO_SFO.so</span></div><div class='input'><span class='co'># Now we can save the model and restore it in a new session</span>
+</div><div class='output co'>#&gt; <span class='message'>Copied DLL from /tmp/RtmpPWWdbW/fileccff46a6d9773.so to /home/jranke/.local/share/mkin/SFO_SFO.so</span></div><div class='input'><span class='co'># Now we can save the model and restore it in a new session</span>
<span class='fu'><a href='https://rdrr.io/r/base/readRDS.html'>saveRDS</a></span><span class='op'>(</span><span class='va'>SFO_SFO.2</span>, file <span class='op'>=</span> <span class='st'>"~/SFO_SFO.rds"</span><span class='op'>)</span>
<span class='co'># Terminate the R session here if you would like to check, and then do</span>
<span class='kw'><a href='https://rdrr.io/r/base/library.html'>library</a></span><span class='op'>(</span><span class='va'><a href='https://pkgdown.jrwb.de/mkin/'>mkin</a></span><span class='op'>)</span>
@@ -397,7 +393,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media</p>
#&gt; })
#&gt; return(predicted)
#&gt; }
-#&gt; &lt;environment: 0x5555572517f8&gt;</div><div class='input'>
+#&gt; &lt;environment: 0x5555645abab8&gt;</div><div class='input'>
<span class='co'># If we have several parallel metabolites</span>
<span class='co'># (compare tests/testthat/test_synthetic_data_for_UBA_2014.R)</span>
<span class='va'>m_synth_DFOP_par</span> <span class='op'>&lt;-</span> <span class='fu'>mkinmod</span><span class='op'>(</span>

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