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authorJohannes Ranke <jranke@uni-bremen.de>2020-10-08 09:31:35 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-10-08 09:31:35 +0200
commitbc3825ae2d12c18ea3d3caf17eb23c93fef180b8 (patch)
tree112e70a29db2fb35dd624af20f4d400c579b0283 /docs/dev/reference/mmkin.html
parentc7635af214729d2dc15dd8fbee2ebe6bc64493a4 (diff)
Fix issues for release
Diffstat (limited to 'docs/dev/reference/mmkin.html')
-rw-r--r--docs/dev/reference/mmkin.html17
1 files changed, 9 insertions, 8 deletions
diff --git a/docs/dev/reference/mmkin.html b/docs/dev/reference/mmkin.html
index 3daf16e1..a5d7ba42 100644
--- a/docs/dev/reference/mmkin.html
+++ b/docs/dev/reference/mmkin.html
@@ -196,8 +196,9 @@ for parallel execution.</p></td>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>A two-dimensional <code><a href='https://rdrr.io/r/base/array.html'>array</a></code> of <code><a href='mkinfit.html'>mkinfit</a></code>
-objects that can be indexed using the model names for the first index (row index)
-and the dataset names for the second index (column index).</p>
+objects and/or try-errors that can be indexed using the model names for the
+first index (row index) and the dataset names for the second index (column
+index).</p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p><code><a href='Extract.mmkin.html'>[.mmkin</a></code> for subsetting, <code><a href='plot.mmkin.html'>plot.mmkin</a></code> for
@@ -218,19 +219,19 @@ plotting.</p></div>
<span class='no'>time_default</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/system.time.html'>system.time</a></span>(<span class='no'>fits.0</span> <span class='kw'>&lt;-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))
<span class='no'>time_1</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/system.time.html'>system.time</a></span>(<span class='no'>fits.4</span> <span class='kw'>&lt;-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#&gt; <span class='warning'>Warning: Optimisation did not converge:</span>
-#&gt; <span class='warning'>false convergence (8)</span></div><div class='input'>
+#&gt; <span class='warning'>false convergence (8)</span></div><div class='output co'>#&gt; <span class='warning'>Warning: Shapiro-Wilk test for standardized residuals: p = 0.0117</span></div><div class='output co'>#&gt; <span class='warning'>Warning: Shapiro-Wilk test for standardized residuals: p = 0.0174</span></div><div class='input'>
<span class='no'>time_default</span></div><div class='output co'>#&gt; user system elapsed
-#&gt; 4.499 0.456 1.983 </div><div class='input'><span class='no'>time_1</span></div><div class='output co'>#&gt; user system elapsed
-#&gt; 5.771 0.003 5.777 </div><div class='input'>
+#&gt; 4.500 0.399 1.311 </div><div class='input'><span class='no'>time_1</span></div><div class='output co'>#&gt; user system elapsed
+#&gt; 5.154 0.008 5.165 </div><div class='input'>
<span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fits.0</span><span class='kw'>[[</span><span class='st'>"SFO_lin"</span>, <span class='fl'>2</span>]])</div><div class='output co'>#&gt; $ff
#&gt; parent_M1 parent_sink M1_M2 M1_sink
-#&gt; 0.7340479 0.2659521 0.7505687 0.2494313
+#&gt; 0.7340478 0.2659522 0.7505691 0.2494309
#&gt;
#&gt; $distimes
#&gt; DT50 DT90
#&gt; parent 0.8777688 2.915885
-#&gt; M1 2.3257457 7.725960
-#&gt; M2 33.7200848 112.015697
+#&gt; M1 2.3257466 7.725963
+#&gt; M2 33.7200800 112.015681
#&gt; </div><div class='input'>
<span class='co'># plot.mkinfit handles rows or columns of mmkin result objects</span>
<span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, ])</div><div class='img'><img src='mmkin-1.png' alt='' width='700' height='433' /></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, ], <span class='kw'>obs_var</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"M1"</span>, <span class='st'>"M2"</span>))</div><div class='img'><img src='mmkin-2.png' alt='' width='700' height='433' /></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>fits.0</span>[, <span class='fl'>1</span>])</div><div class='img'><img src='mmkin-3.png' alt='' width='700' height='433' /></div><div class='input'><span class='co'># Use double brackets to extract a single mkinfit object, which will be plotted</span>

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