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authorJohannes Ranke <jranke@uni-bremen.de>2023-02-13 05:19:08 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2023-02-13 05:19:08 +0100
commit8d1a84ac2190538ed3bac53a303064e281595868 (patch)
treeacb894d85ab7ec87c4911c355a5264a77e08e34b /docs/dev/reference/parplot.html
parent51d63256a7b3020ee11931d61b4db97b9ded02c0 (diff)
parent4200e566ad2600f56bc3987669aeab88582139eb (diff)
Merge branch 'main' into custom_lsoda_call
Diffstat (limited to 'docs/dev/reference/parplot.html')
-rw-r--r--docs/dev/reference/parplot.html22
1 files changed, 19 insertions, 3 deletions
diff --git a/docs/dev/reference/parplot.html b/docs/dev/reference/parplot.html
index ffe93e6c..720c0b2a 100644
--- a/docs/dev/reference/parplot.html
+++ b/docs/dev/reference/parplot.html
@@ -19,7 +19,7 @@ or by their medians as proposed in the paper by Duchesne et al. (2021)."><meta n
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.0</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
</span>
</div>
@@ -61,7 +61,10 @@ or by their medians as proposed in the paper by Duchesne et al. (2021)."><meta n
<a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
</li>
<li>
- <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+ <a href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
+ </li>
+ <li>
+ <a href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
</ul></li>
<li>
@@ -100,6 +103,7 @@ or by their medians as proposed in the paper by Duchesne et al. (2021).</p>
<span><span class="fu">parplot</span><span class="op">(</span></span>
<span> <span class="va">object</span>,</span>
<span> llmin <span class="op">=</span> <span class="op">-</span><span class="cn">Inf</span>,</span>
+<span> llquant <span class="op">=</span> <span class="cn">NA</span>,</span>
<span> scale <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"best"</span>, <span class="st">"median"</span><span class="op">)</span>,</span>
<span> lpos <span class="op">=</span> <span class="st">"bottomleft"</span>,</span>
<span> main <span class="op">=</span> <span class="st">""</span>,</span>
@@ -121,8 +125,14 @@ or by their medians as proposed in the paper by Duchesne et al. (2021).</p>
<dd><p>The minimum likelihood of objects to be shown</p></dd>
+<dt>llquant</dt>
+<dd><p>Fractional value for selecting only the fits with higher
+likelihoods. Overrides 'llmin'.</p></dd>
+
+
<dt>scale</dt>
-<dd><p>By default, scale parameters using the best available fit.
+<dd><p>By default, scale parameters using the best
+available fit.
If 'median', parameters are scaled using the median parameters from all fits.</p></dd>
@@ -134,6 +144,12 @@ If 'median', parameters are scaled using the median parameters from all fits.</p
<dd><p>Title of the plot</p></dd>
</dl></div>
+ <div id="details">
+ <h2>Details</h2>
+ <p>Starting values of degradation model parameters and error model parameters
+are shown as green circles. The results obtained in the original run
+are shown as red circles.</p>
+ </div>
<div id="references">
<h2>References</h2>
<p>Duchesne R, Guillemin A, Gandrillon O, Crauste F. Practical

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