diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-11-05 08:31:21 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-11-05 08:31:21 +0100 |
| commit | 9298a503d8de99dad1f61d6eb8bc228dd4acce6b (patch) | |
| tree | 22a8d261835d36e59c371a858598dbe309aa89ec /docs/dev/reference/saemix.html | |
| parent | f24a86c1f33e06c8114021c5c3956b5f7c400c18 (diff) | |
Fix link and update docs
Diffstat (limited to 'docs/dev/reference/saemix.html')
| -rw-r--r-- | docs/dev/reference/saemix.html | 35 |
1 files changed, 19 insertions, 16 deletions
diff --git a/docs/dev/reference/saemix.html b/docs/dev/reference/saemix.html index 2c4fd2d7..c8cf9fab 100644 --- a/docs/dev/reference/saemix.html +++ b/docs/dev/reference/saemix.html @@ -153,7 +153,7 @@ list of mkinfit objects that have been obtained by fitting the same model to a list of datasets.</p> </div> - <pre class="usage"><span class='fu'>saemix_model</span><span class='op'>(</span><span class='va'>object</span>, cores <span class='op'>=</span> <span class='fu'>parallel</span><span class='fu'>::</span><span class='fu'><a href='https://rdrr.io/r/parallel/detectCores.html'>detectCores</a></span><span class='op'>(</span><span class='op'>)</span><span class='op'>)</span> + <pre class="usage"><span class='fu'>saemix_model</span><span class='op'>(</span><span class='va'>object</span>, cores <span class='op'>=</span> <span class='fl'>1</span><span class='op'>)</span> <span class='fu'>saemix_data</span><span class='op'>(</span><span class='va'>object</span>, <span class='va'>...</span><span class='op'>)</span></pre> @@ -162,12 +162,15 @@ a list of datasets.</p> <colgroup><col class="name" /><col class="desc" /></colgroup> <tr> <th>object</th> - <td><p>An mmkin row object containing several fits of the same model to different datasets</p></td> + <td><p>An mmkin row object containing several fits of the same model +to different datasets</p></td> </tr> <tr> <th>cores</th> - <td><p>The number of cores to be used for multicore processing. -On Windows machines, cores > 1 is currently not supported.</p></td> + <td><p>The number of cores to be used for multicore processing using +<code><a href='https://rdrr.io/r/parallel/mclapply.html'>parallel::mclapply()</a></code>. Using more than 1 core is experimental and may +lead to uncontrolled forking, apparently depending on the BLAS version +used.</p></td> </tr> <tr> <th>...</th> @@ -237,8 +240,8 @@ variances of the deviations of the parameters from these mean values.</p> #> res <- unlist(res_list) #> return(res) #> } -#> <bytecode: 0x555555c89340> -#> <environment: 0x555555c82680> +#> <bytecode: 0x55555d62aeb8> +#> <environment: 0x55555e35c170> #> Nb of parameters: 4 #> parameter names: parent_0 log_k_parent log_k_A1 f_parent_ilr_1 #> distribution: @@ -271,10 +274,10 @@ variances of the deviations of the parameters from these mean values.</p> nbiter.saemix <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='fl'>200</span>, <span class='fl'>80</span><span class='op'>)</span><span class='op'>)</span> <span class='va'>f_saemix</span> <span class='op'><-</span> <span class='fu'><a href='https://rdrr.io/pkg/saemix/man/saemix.html'>saemix</a></span><span class='op'>(</span><span class='va'>m_saemix</span>, <span class='va'>d_saemix</span>, <span class='va'>saemix_options</span><span class='op'>)</span> </div><div class='output co'>#> Running main SAEM algorithm -#> [1] "Thu Oct 15 14:51:26 2020" +#> [1] "Thu Nov 5 08:26:39 2020" #> .. #> Minimisation finished -#> [1] "Thu Oct 15 14:53:18 2020"</div><div class='img'><img src='saemix-1.png' alt='' width='700' height='433' /></div><div class='output co'>#> Nonlinear mixed-effects model fit by the SAEM algorithm +#> [1] "Thu Nov 5 08:28:33 2020"</div><div class='img'><img src='saemix-1.png' alt='' width='700' height='433' /></div><div class='output co'>#> Nonlinear mixed-effects model fit by the SAEM algorithm #> ----------------------------------- #> ---- Data ---- #> ----------------------------------- @@ -338,8 +341,8 @@ variances of the deviations of the parameters from these mean values.</p> #> res <- unlist(res_list) #> return(res) #> } -#> <bytecode: 0x555555c89340> -#> <environment: 0x555555c82680> +#> <bytecode: 0x55555d62aeb8> +#> <environment: 0x55555e35c170> #> Nb of parameters: 4 #> parameter names: parent_0 log_k_parent log_k_A1 f_parent_ilr_1 #> distribution: @@ -483,8 +486,8 @@ variances of the deviations of the parameters from these mean values.</p> #> res <- unlist(res_list) #> return(res) #> } -#> <bytecode: 0x555555c89340> -#> <environment: 0x55555df58cf8> +#> <bytecode: 0x55555d62aeb8> +#> <environment: 0x55555cd8e028> #> Nb of parameters: 2 #> parameter names: parent_0 log_k_parent #> distribution: @@ -510,10 +513,10 @@ variances of the deviations of the parameters from these mean values.</p> #> Structured data: value ~ time + name | ds #> X variable for graphs: time () </div><div class='input'><span class='va'>f_saemix_tc</span> <span class='op'><-</span> <span class='fu'><a href='https://rdrr.io/pkg/saemix/man/saemix.html'>saemix</a></span><span class='op'>(</span><span class='va'>m_saemix_tc</span>, <span class='va'>d_saemix_tc</span>, <span class='va'>saemix_options</span><span class='op'>)</span> </div><div class='output co'>#> Running main SAEM algorithm -#> [1] "Thu Oct 15 14:53:35 2020" +#> [1] "Thu Nov 5 08:28:50 2020" #> .. #> Minimisation finished -#> [1] "Thu Oct 15 14:54:25 2020"</div><div class='output co'>#> Nonlinear mixed-effects model fit by the SAEM algorithm +#> [1] "Thu Nov 5 08:29:41 2020"</div><div class='output co'>#> Nonlinear mixed-effects model fit by the SAEM algorithm #> ----------------------------------- #> ---- Data ---- #> ----------------------------------- @@ -577,8 +580,8 @@ variances of the deviations of the parameters from these mean values.</p> #> res <- unlist(res_list) #> return(res) #> } -#> <bytecode: 0x555555c89340> -#> <environment: 0x55555df58cf8> +#> <bytecode: 0x55555d62aeb8> +#> <environment: 0x55555cd8e028> #> Nb of parameters: 2 #> parameter names: parent_0 log_k_parent #> distribution: |