Improve docs of multistart method

7 files changed, 9 insertions, 15 deletions

diff --git a/docs/dev/reference/Rplot001.png b/docs/dev/reference/Rplot001.png
index 5de2bdc7..278fd2e2 100644
--- a/docs/dev/reference/Rplot001.png
+++ b/docs/dev/reference/Rplot001.png
diff --git a/docs/dev/reference/Rplot002.png b/docs/dev/reference/Rplot002.png
index 556ca0a7..4b646f22 100644
--- a/docs/dev/reference/Rplot002.png
+++ b/docs/dev/reference/Rplot002.png
diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html
index 84bbbdc4..85dc7c6e 100644
--- a/docs/dev/reference/index.html
+++ b/docs/dev/reference/index.html
@@ -81,11 +81,6 @@
     <li>
       <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
     </li>
-    <li class="divider">
-    <li class="dropdown-header">Code coverage report</li>
-    <li>
-      <a href="../coverage/coverage.html"></a>
-    </li>
   </ul></li>
 <li>
   <a href="../news/index.html">News</a>
diff --git a/docs/dev/reference/mkinpredict.html b/docs/dev/reference/mkinpredict.html
index 01c15a19..7d8e7c26 100644
--- a/docs/dev/reference/mkinpredict.html
+++ b/docs/dev/reference/mkinpredict.html
@@ -394,11 +394,12 @@ as these always return mapped output.</p></dd>
 <span class="r-in"><span>      <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="fl">100</span>, m1 <span class="op">=</span> <span class="fl">0</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">20</span>, by <span class="op">=</span> <span class="fl">0.1</span><span class="op">)</span>,</span></span>
 <span class="r-in"><span>      solution_type <span class="op">=</span> <span class="st">"analytical"</span>, use_compiled <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span><span class="op">[</span><span class="fl">201</span>,<span class="op">]</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span></span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Loading required package: rbenchmark</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>               test relative elapsed</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 2 deSolve_compiled      1.0   0.002</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 4       analytical      1.0   0.002</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 1            eigen      4.0   0.008</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 3          deSolve     30.5   0.061</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 deSolve_compiled     1.00   0.004</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1            eigen     4.00   0.016</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4       analytical     4.25   0.017</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3          deSolve    40.75   0.163</span>
 <span class="r-in"><span></span></span>
 <span class="r-in"><span><span class="co"># \dontrun{</span></span></span>
 <span class="r-in"><span>  <span class="co"># Predict from a fitted model</span></span></span>
diff --git a/docs/dev/reference/multistart-1.png b/docs/dev/reference/multistart-1.png
index c7937d67..ee0306d6 100644
--- a/docs/dev/reference/multistart-1.png
+++ b/docs/dev/reference/multistart-1.png
diff --git a/docs/dev/reference/multistart-2.png b/docs/dev/reference/multistart-2.png
index e1983f12..69a178e3 100644
--- a/docs/dev/reference/multistart-2.png
+++ b/docs/dev/reference/multistart-2.png
diff --git a/docs/dev/reference/multistart.html b/docs/dev/reference/multistart.html
index 3cdede7b..36767560 100644
--- a/docs/dev/reference/multistart.html
+++ b/docs/dev/reference/multistart.html
@@ -222,15 +222,13 @@ doi: 10.1186/s12859-021-04373-4.</p>
 <span class="r-in"><span></span></span>
 <span class="r-in"><span><span class="va">f_saem_reduced</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/stats/update.html" class="external-link">update</a></span><span class="op">(</span><span class="va">f_saem_full</span>, no_random_effect <span class="op">=</span> <span class="st">"log_k2"</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="fu"><a href="illparms.html">illparms</a></span><span class="op">(</span><span class="va">f_saem_reduced</span><span class="op">)</span></span></span>
-<span class="r-in"><span><span class="co"># On Windows, we need to create a cluster first. When working with</span></span></span>
-<span class="r-in"><span><span class="co"># such a cluster, we need to export the mmkin object to the cluster</span></span></span>
-<span class="r-in"><span><span class="co"># nodes, as it is referred to when updating the saem object on the nodes.</span></span></span>
+<span class="r-in"><span><span class="co"># On Windows, we need to create a PSOCK cluster first and refer to it</span></span></span>
+<span class="r-in"><span><span class="co"># in the call to multistart()</span></span></span>
 <span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va">parallel</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="va">cl</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/parallel/makeCluster.html" class="external-link">makePSOCKcluster</a></span><span class="op">(</span><span class="fl">12</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="va">f_saem_reduced_multi</span> <span class="op">&lt;-</span> <span class="fu">multistart</span><span class="op">(</span><span class="va">f_saem_reduced</span>, n <span class="op">=</span> <span class="fl">16</span>, cluster <span class="op">=</span> <span class="va">cl</span><span class="op">)</span></span></span>
-<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in checkForRemoteErrors(val):</span> 16 nodes produced errors; first error: unused argument (mc.preschedule = FALSE)</span>
-<span class="r-in"><span><span class="fu"><a href="parplot.html">parplot</a></span><span class="op">(</span><span class="va">f_saem_reduced_multi</span>, lpos <span class="op">=</span> <span class="st">"topright"</span><span class="op">)</span></span></span>
-<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in parplot(f_saem_reduced_multi, lpos = "topright"):</span> object 'f_saem_reduced_multi' not found</span>
+<span class="r-in"><span><span class="fu"><a href="parplot.html">parplot</a></span><span class="op">(</span><span class="va">f_saem_reduced_multi</span>, lpos <span class="op">=</span> <span class="st">"topright"</span>, ylim <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0.5</span>, <span class="fl">2</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-plt img"><img src="multistart-2.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/parallel/makeCluster.html" class="external-link">stopCluster</a></span><span class="op">(</span><span class="va">cl</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="co"># }</span></span></span>
 </code></pre></div>