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authorJohannes Ranke <jranke@uni-bremen.de>2023-05-19 17:08:43 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2023-05-19 17:10:16 +0200
commitcf54ccca37d27480dbf8d59eb027300518f7ad75 (patch)
tree81a9d5955f716a74822ecb65dc83daeeb7efbba6 /docs/reference/AIC.mmkin.html
parentc931057ce8f05d3a0dfefea72b73903efb82e900 (diff)
Prepare release of v1.2.4v1.2.4
- Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release
Diffstat (limited to 'docs/reference/AIC.mmkin.html')
-rw-r--r--docs/reference/AIC.mmkin.html10
1 files changed, 6 insertions, 4 deletions
diff --git a/docs/reference/AIC.mmkin.html b/docs/reference/AIC.mmkin.html
index a53a2735..15df31b6 100644
--- a/docs/reference/AIC.mmkin.html
+++ b/docs/reference/AIC.mmkin.html
@@ -18,7 +18,7 @@ same dataset."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/li
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.3</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.4</span>
</span>
</div>
@@ -153,6 +153,8 @@ dataframe if there are several fits in the column).</p>
<span class="r-in"><span> <span class="va">f</span> <span class="op">&lt;-</span> <span class="fu"><a href="mmkin.html">mmkin</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"FOMC"</span>, <span class="st">"DFOP"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="st">"FOCUS A"</span> <span class="op">=</span> <span class="va">FOCUS_2006_A</span>,</span></span>
<span class="r-in"><span> <span class="st">"FOCUS C"</span> <span class="op">=</span> <span class="va">FOCUS_2006_C</span><span class="op">)</span>, cores <span class="op">=</span> <span class="fl">1</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Optimisation did not converge:</span>
+<span class="r-wrn co"><span class="r-pr">#&gt;</span> false convergence (8)</span>
<span class="r-in"><span> <span class="co"># We get a warning because the FOMC model does not converge for the</span></span></span>
<span class="r-in"><span> <span class="co"># FOCUS A dataset, as it is well described by SFO</span></span></span>
<span class="r-in"><span></span></span>
@@ -166,17 +168,17 @@ dataframe if there are several fits in the column).</p>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/stats/AIC.html" class="external-link">AIC</a></span><span class="op">(</span><span class="va">f</span><span class="op">[</span>, <span class="st">"FOCUS A"</span><span class="op">]</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> df AIC</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> SFO 3 55.28197</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> FOMC 4 57.28222</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> FOMC 4 57.28198</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DFOP 5 59.28197</span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/stats/AIC.html" class="external-link">AIC</a></span><span class="op">(</span><span class="va">f</span><span class="op">[</span>, <span class="st">"FOCUS A"</span><span class="op">]</span>, k <span class="op">=</span> <span class="fl">0</span><span class="op">)</span> <span class="co"># If we do not penalize additional parameters, we get nearly the same</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> df AIC</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> SFO 3 49.28197</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> FOMC 4 49.28222</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> FOMC 4 49.28198</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DFOP 5 49.28197</span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/stats/AIC.html" class="external-link">BIC</a></span><span class="op">(</span><span class="va">f</span><span class="op">[</span>, <span class="st">"FOCUS A"</span><span class="op">]</span><span class="op">)</span> <span class="co"># Comparing the BIC gives a very similar picture</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> df BIC</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> SFO 3 55.52030</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> FOMC 4 57.59999</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> FOMC 4 57.59974</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DFOP 5 59.67918</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span> <span class="co"># For FOCUS C, the more complex models fit better</span></span></span>

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