aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/Extract.mmkin.html
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2018-03-03 10:39:34 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2018-03-03 10:39:34 +0100
commit5aec8e34680e05671347f7577ae36c9ad8e37063 (patch)
tree2cfc0f696cc202e9c9a7b7951930bfe88c355d23 /docs/reference/Extract.mmkin.html
parent7ceb1dc732ac8674dd8dd70b798fe12378ec10af (diff)
parent8650f26f63a64ac8b72326e2679719744ac99f07 (diff)
Merge branch 'master' of kolab:mkin
Diffstat (limited to 'docs/reference/Extract.mmkin.html')
-rw-r--r--docs/reference/Extract.mmkin.html57
1 files changed, 36 insertions, 21 deletions
diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html
index 5d4eca29..11738484 100644
--- a/docs/reference/Extract.mmkin.html
+++ b/docs/reference/Extract.mmkin.html
@@ -18,12 +18,19 @@
<!-- Font Awesome icons -->
<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
+
+
+<meta property="og:title" content="Subsetting method for mmkin objects — [.mmkin" />
+<meta property="og:description" content="Subsetting method for mmkin objects." />
+<meta name="twitter:card" content="summary" />
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -70,6 +77,9 @@
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
+ <a href="../articles/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ </li>
+ <li>
<a href="../articles/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
@@ -83,12 +93,7 @@
</ul>
<ul class="nav navbar-nav navbar-right">
- <li>
- <a href="http://github.com/jranke/mkin">
- <span class="fa fa-github fa-lg"></span>
-
- </a>
-</li>
+
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
@@ -147,16 +152,16 @@
<span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='no'>fits</span>[<span class='st'>"FOMC"</span>, ]</div><div class='output co'>#&gt; dataset
#&gt; model B C
-#&gt; FOMC List,42 List,42
+#&gt; FOMC List,45 List,45
#&gt; attr(,"class")
#&gt; [1] "mmkin"</div><div class='input'> <span class='no'>fits</span>[, <span class='st'>"B"</span>]</div><div class='output co'>#&gt; dataset
#&gt; model B
-#&gt; SFO List,42
-#&gt; FOMC List,42
+#&gt; SFO List,45
+#&gt; FOMC List,45
#&gt; attr(,"class")
#&gt; [1] "mmkin"</div><div class='input'> <span class='no'>fits</span>[<span class='st'>"SFO"</span>, <span class='st'>"B"</span>]</div><div class='output co'>#&gt; dataset
#&gt; model B
-#&gt; SFO List,42
+#&gt; SFO List,45
#&gt; attr(,"class")
#&gt; [1] "mmkin"</div><div class='input'>
<span class='fu'>head</span>(
@@ -164,7 +169,7 @@
<span class='no'>fits</span><span class='kw'>[[</span><span class='st'>"FOMC"</span>, <span class='st'>"B"</span>]]
)</div><div class='output co'>#&gt; $par
#&gt; parent_0 log_alpha log_beta
-#&gt; 99.666192 2.549849 5.050586
+#&gt; 99.666193 2.549849 5.050586
#&gt;
#&gt; $ssr
#&gt; [1] 28.58291
@@ -180,7 +185,7 @@
#&gt; 25 78
#&gt;
#&gt; $counts
-#&gt; [1] "both X-convergence and relative convergence (5)"
+#&gt; [1] "relative convergence (4)"
#&gt; </div><div class='input'>
<span class='fu'>head</span>(
<span class='co'># The same can be achieved by</span>
@@ -258,7 +263,7 @@
#&gt;
#&gt; $time
#&gt; user system elapsed
-#&gt; 0.064 0.000 0.063
+#&gt; 0.058 0.000 0.057
#&gt;
#&gt; $mkinmod
#&gt; &lt;mkinmod&gt; model generated with
@@ -398,7 +403,7 @@
#&gt; {
#&gt; assign("calls", calls + 1, inherits = TRUE)
#&gt; if (trace_parms)
-#&gt; cat(P, "\\n")
+#&gt; cat(P, "\n")
#&gt; if (length(state.ini.optim) &gt; 0) {
#&gt; odeini &lt;- c(P[1:length(state.ini.optim)], state.ini.fixed)
#&gt; names(odeini) &lt;- c(state.ini.optim.boxnames, state.ini.fixed.boxnames)
@@ -420,7 +425,7 @@
#&gt; if (mC$model &lt; cost.old) {
#&gt; if (!quiet)
#&gt; cat("Model cost at call ", calls, ": ", mC$model,
-#&gt; "\\n")
+#&gt; "\n")
#&gt; if (plot) {
#&gt; outtimes_plot = seq(min(observed$time), max(observed$time),
#&gt; length.out = 100)
@@ -447,8 +452,8 @@
#&gt; }
#&gt; return(mC)
#&gt; }
-#&gt; &lt;bytecode: 0x560110508c60&gt;
-#&gt; &lt;environment: 0x56010f8d8c30&gt;
+#&gt; &lt;bytecode: 0x55555ad80908&gt;
+#&gt; &lt;environment: 0x55555b1b4b90&gt;
#&gt;
#&gt; $cost_notrans
#&gt; function (P)
@@ -470,8 +475,8 @@
#&gt; scaleVar = scaleVar)
#&gt; return(mC)
#&gt; }
-#&gt; &lt;bytecode: 0x56010fede550&gt;
-#&gt; &lt;environment: 0x56010f8d8c30&gt;
+#&gt; &lt;bytecode: 0x55555b174428&gt;
+#&gt; &lt;environment: 0x55555b1b4b90&gt;
#&gt;
#&gt; $hessian_notrans
#&gt; parent_0 k_parent_sink
@@ -512,6 +517,10 @@
#&gt; $weight.ini
#&gt; [1] "none"
#&gt;
+#&gt; $tc.ini
+#&gt; sigma_low rsd_high
+#&gt; 0.50 0.07
+#&gt;
#&gt; $reweight.tol
#&gt; [1] 1e-08
#&gt;
@@ -534,7 +543,13 @@
#&gt; 99.17407
#&gt;
#&gt; $date
-#&gt; [1] "Sat Jul 29 15:14:04 2017"
+#&gt; [1] "Thu Mar 1 14:26:09 2018"
+#&gt;
+#&gt; $version
+#&gt; [1] "0.9.47.1"
+#&gt;
+#&gt; $Rversion
+#&gt; [1] "3.4.3"
#&gt;
#&gt; attr(,"class")
#&gt; [1] "mkinfit" "modFit"
@@ -563,7 +578,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+ <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
</div>
</footer>

Contact - Imprint