aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/NAFTA_SOP_Attachment.html
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2021-02-03 16:41:31 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-02-03 18:18:19 +0100
commitf0ef23a7598e5d19648ae4edc2b74e0fba27a41c (patch)
tree03af20e730330e148acf3a7c008d82387dbe52eb /docs/reference/NAFTA_SOP_Attachment.html
parent82814b17ec182467c25325d747fffa8ffbe4bb33 (diff)
Prepare for v1.0.0v1.0.0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
Diffstat (limited to 'docs/reference/NAFTA_SOP_Attachment.html')
-rw-r--r--docs/reference/NAFTA_SOP_Attachment.html42
1 files changed, 24 insertions, 18 deletions
diff --git a/docs/reference/NAFTA_SOP_Attachment.html b/docs/reference/NAFTA_SOP_Attachment.html
index eadab723..03a45bc3 100644
--- a/docs/reference/NAFTA_SOP_Attachment.html
+++ b/docs/reference/NAFTA_SOP_Attachment.html
@@ -72,7 +72,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.2</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.0</span>
</span>
</div>
@@ -109,6 +109,9 @@
<li>
<a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
</li>
+ <li>
+ <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+ </li>
</ul>
</li>
<li>
@@ -117,8 +120,8 @@
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
- <a href="http://github.com/jranke/mkin/">
- <span class="fab fa fab fa-github fa-lg"></span>
+ <a href="https://github.com/jranke/mkin/">
+ <span class="fab fa-github fa-lg"></span>
</a>
</li>
@@ -144,7 +147,7 @@
<p>Data taken from from Attachment 1 of the SOP.</p>
</div>
- <pre class="usage"><span class='no'>NAFTA_SOP_Attachment</span></pre>
+ <pre class="usage"><span class='va'>NAFTA_SOP_Attachment</span></pre>
<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
@@ -163,7 +166,9 @@
<a href='https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance'>https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance</a></p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'> <span class='no'>nafta_att_p5a</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='nafta.html'>nafta</a></span>(<span class='no'>NAFTA_SOP_Attachment</span><span class='kw'>[[</span><span class='st'>"p5a"</span>]], <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>)</div><div class='output co'>#&gt; <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#&gt; <span class='message'>The half-life obtained from the IORE model may be used</span></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>nafta_att_p5a</span>)</div><div class='output co'>#&gt; Sums of squares:
+ <pre class="examples"><div class='input'> <span class='va'>nafta_att_p5a</span> <span class='op'>&lt;-</span> <span class='fu'><a href='nafta.html'>nafta</a></span><span class='op'>(</span><span class='va'>NAFTA_SOP_Attachment</span><span class='op'>[[</span><span class='st'>"p5a"</span><span class='op'>]</span><span class='op'>]</span>, cores <span class='op'>=</span> <span class='fl'>1</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#&gt; <span class='message'>The half-life obtained from the IORE model may be used</span></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>nafta_att_p5a</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; Sums of squares:
#&gt; SFO IORE DFOP
#&gt; 465.21753 56.27506 32.06401
#&gt;
@@ -172,23 +177,23 @@
#&gt;
#&gt; Parameters:
#&gt; $SFO
-#&gt; Estimate Pr(&gt;t) Lower Upper
-#&gt; parent_0 95.8401 4.67e-21 92.245 99.4357
-#&gt; k_parent_sink 0.0102 3.92e-12 0.009 0.0117
-#&gt; sigma 4.8230 3.81e-06 3.214 6.4318
+#&gt; Estimate Pr(&gt;t) Lower Upper
+#&gt; parent_0 95.8401 4.67e-21 92.245 99.4357
+#&gt; k_parent 0.0102 3.92e-12 0.009 0.0117
+#&gt; sigma 4.8230 3.81e-06 3.214 6.4318
#&gt;
#&gt; $IORE
-#&gt; Estimate Pr(&gt;t) Lower Upper
-#&gt; parent_0 1.01e+02 NA 9.91e+01 1.02e+02
-#&gt; k__iore_parent_sink 1.54e-05 NA 4.08e-06 5.84e-05
-#&gt; N_parent 2.57e+00 NA 2.25e+00 2.89e+00
-#&gt; sigma 1.68e+00 NA 1.12e+00 2.24e+00
+#&gt; Estimate Pr(&gt;t) Lower Upper
+#&gt; parent_0 1.01e+02 NA 9.91e+01 1.02e+02
+#&gt; k__iore_parent 1.54e-05 NA 4.08e-06 5.84e-05
+#&gt; N_parent 2.57e+00 NA 2.25e+00 2.89e+00
+#&gt; sigma 1.68e+00 NA 1.12e+00 2.24e+00
#&gt;
#&gt; $DFOP
#&gt; Estimate Pr(&gt;t) Lower Upper
#&gt; parent_0 9.99e+01 1.41e-26 98.8116 101.0810
#&gt; k1 2.67e-02 5.05e-06 0.0243 0.0295
-#&gt; k2 2.86e-12 5.00e-01 0.0000 Inf
+#&gt; k2 2.42e-12 5.00e-01 0.0000 Inf
#&gt; g 6.47e-01 3.67e-06 0.6248 0.6677
#&gt; sigma 1.27e+00 8.91e-06 0.8395 1.6929
#&gt;
@@ -197,10 +202,11 @@
#&gt; DT50 DT90 DT50_rep
#&gt; SFO 67.7 2.25e+02 6.77e+01
#&gt; IORE 58.2 1.07e+03 3.22e+02
-#&gt; DFOP 55.5 4.42e+11 2.42e+11
+#&gt; DFOP 55.5 5.22e+11 2.86e+11
#&gt;
#&gt; Representative half-life:
-#&gt; [1] 321.51</div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>nafta_att_p5a</span>)</div><div class='img'><img src='NAFTA_SOP_Attachment-1.png' alt='' width='700' height='433' /></div></pre>
+#&gt; [1] 321.51</div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='va'>nafta_att_p5a</span><span class='op'>)</span>
+</div><div class='img'><img src='NAFTA_SOP_Attachment-1.png' alt='' width='700' height='433' /></div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
<nav id="toc" data-toggle="toc" class="sticky-top">
@@ -216,7 +222,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
</div>
</footer>

Contact - Imprint