Documentation improvements, rebuild static docs

1 files changed, 29 insertions, 28 deletions

diff --git a/docs/reference/endpoints.html b/docs/reference/endpoints.html
index ef38c521..05d65191 100644
--- a/docs/reference/endpoints.html
+++ b/docs/reference/endpoints.html
@@ -11,23 +11,27 @@ with mkinfit — endpoints • mkin</title>
 
 
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@@ -43,7 +47,6 @@ from kinetic models fitted with mkinfit. If the SFORB model was specified
 for one of the parents or metabolites, the Eigenvalues are returned. These
 are equivalent to the rate constantes of the DFOP model, but with the
 advantage that the SFORB model can also be used for metabolites." />
-<meta name="twitter:card" content="summary" />
 
 
 
@@ -61,7 +64,7 @@ advantage that the SFORB model can also be used for metabolites." />
 
   </head>
 
-  <body>
+  <body data-spy="scroll" data-target="#toc">
     <div class="container template-reference-topic">
       <header>
       <div class="navbar navbar-default navbar-fixed-top" role="navigation">
@@ -75,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.10</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.1</span>
       </span>
     </div>
 
@@ -119,7 +122,12 @@ advantage that the SFORB model can also be used for metabolites." />
 </li>
       </ul>
       <ul class="nav navbar-nav navbar-right">
-        
+        <li>
+  <a href="http://github.com/jranke/mkin/">
+    <span class="fab fa fab fa-github fa-lg"></span>
+     
+  </a>
+</li>
       </ul>
       
     </div><!--/.nav-collapse -->
@@ -135,7 +143,7 @@ advantage that the SFORB model can also be used for metabolites." />
     <div class="page-header">
     <h1>Function to calculate endpoints for further use from kinetic models fitted
 with mkinfit</h1>
-    
+    <small class="dont-index">Source: <a href='http://github.com/jranke/mkin/blob/master/R/endpoints.R'><code>R/endpoints.R</code></a></small>
     <div class="hidden name"><code>endpoints.Rd</code></div>
     </div>
 
@@ -162,9 +170,9 @@ advantage that the SFORB model can also be used for metabolites.</p>
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
 
     <p>A list with a matrix of dissipation times named distimes,
-  and, if applicable, a vector of formation fractions named ff
-  and, if the SFORB model was in use, a vector of eigenvalues
-  of these SFORB models, equivalent to DFOP rate constants</p>
+and, if applicable, a vector of formation fractions named ff
+and, if the SFORB model was in use, a vector of eigenvalues
+of these SFORB models, equivalent to DFOP rate constants</p>
     <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
 
     <p>The function is used internally by <code><a href='summary.mkinfit.html'>summary.mkinfit</a></code>.</p>
@@ -192,17 +200,10 @@ advantage that the SFORB model can also be used for metabolites.</p>
 
 </div></pre>
   </div>
-  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2>Contents</h2>
-    <ul class="nav nav-pills nav-stacked">
-      <li><a href="#arguments">Arguments</a></li>
-      <li><a href="#value">Value</a></li>
-      <li><a href="#note">Note</a></li>
-      <li><a href="#examples">Examples</a></li>
-    </ul>
-
-    <h2>Author</h2>
-    <p>Johannes Ranke</p>
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top">
+      <h2 data-toc-skip>Contents</h2>
+    </nav>
   </div>
 </div>
 
@@ -213,7 +214,7 @@ advantage that the SFORB model can also be used for metabolites.</p>
 </div>
 
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-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
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