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authorJohannes Ranke <jranke@uni-bremen.de>2021-02-15 14:08:13 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-02-15 15:20:53 +0100
commita9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52 (patch)
treea9ecf25af6657e70d8f1faabd88fb6e2f6334b07 /docs/reference/mccall81_245T.html
parentb4582fc7d3f1d395bfd9d870137b705469d9eab2 (diff)
Improve README, introductory vignette and some other docsv1.0.3
Also bump version to 1.0.3.
Diffstat (limited to 'docs/reference/mccall81_245T.html')
-rw-r--r--docs/reference/mccall81_245T.html44
1 files changed, 22 insertions, 22 deletions
diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html
index b99138a0..b7dca4a7 100644
--- a/docs/reference/mccall81_245T.html
+++ b/docs/reference/mccall81_245T.html
@@ -74,7 +74,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.0</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.3</span>
</span>
</div>
@@ -181,30 +181,30 @@
<span class='va'>fit.1</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='va'>SFO_SFO_SFO</span>, <span class='fu'><a href='https://rdrr.io/r/base/subset.html'>subset</a></span><span class='op'>(</span><span class='va'>mccall81_245T</span>, <span class='va'>soil</span> <span class='op'>==</span> <span class='st'>"Commerce"</span><span class='op'>)</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span><span class='op'>(</span><span class='va'>fit.1</span><span class='op'>)</span><span class='op'>$</span><span class='va'>bpar</span>
</div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t)
-#&gt; T245_0 1.038550e+02 2.1847074888 47.537272 4.472189e-18
+#&gt; T245_0 1.038550e+02 2.1847074945 47.537272 4.472189e-18
#&gt; k_T245 4.337042e-02 0.0018983965 22.845818 2.276911e-13
-#&gt; k_phenol 4.050581e-01 0.2986993400 1.356073 9.756988e-02
-#&gt; k_anisole 6.678742e-03 0.0008021439 8.326114 2.623176e-07
-#&gt; f_T245_to_phenol 6.227599e-01 0.3985340295 1.562627 6.949412e-02
-#&gt; f_phenol_to_anisole 1.000000e+00 0.6718439378 1.488441 7.867787e-02
-#&gt; sigma 2.514628e+00 0.4907558750 5.123989 6.233156e-05
+#&gt; k_phenol 4.050581e-01 0.2986993563 1.356073 9.756989e-02
+#&gt; k_anisole 6.678742e-03 0.0008021439 8.326114 2.623177e-07
+#&gt; f_T245_to_phenol 6.227599e-01 0.3985340558 1.562627 6.949413e-02
+#&gt; f_phenol_to_anisole 1.000000e+00 0.6718439825 1.488441 7.867789e-02
+#&gt; sigma 2.514628e+00 0.4907558883 5.123989 6.233157e-05
#&gt; Lower Upper
-#&gt; T245_0 99.246061370 1.084640e+02
+#&gt; T245_0 99.246061385 1.084640e+02
#&gt; k_T245 0.039631621 4.746194e-02
-#&gt; k_phenol 0.218013878 7.525762e-01
+#&gt; k_phenol 0.218013879 7.525762e-01
#&gt; k_anisole 0.005370739 8.305299e-03
-#&gt; f_T245_to_phenol 0.547559083 6.924813e-01
+#&gt; f_T245_to_phenol 0.547559081 6.924813e-01
#&gt; f_phenol_to_anisole 0.000000000 1.000000e+00
#&gt; sigma 1.706607296 3.322649e+00</div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>fit.1</span><span class='op'>)</span>
</div><div class='output co'>#&gt; $ff
#&gt; T245_phenol T245_sink phenol_anisole phenol_sink
-#&gt; 6.227599e-01 3.772401e-01 1.000000e+00 6.894640e-11
+#&gt; 6.227599e-01 3.772401e-01 1.000000e+00 3.773626e-10
#&gt;
#&gt; $distimes
#&gt; DT50 DT90
#&gt; T245 15.982025 53.09114
#&gt; phenol 1.711229 5.68458
-#&gt; anisole 103.784092 344.76329
+#&gt; anisole 103.784093 344.76329
#&gt; </div><div class='input'> <span class='co'># formation fraction from phenol to anisol is practically 1. As we cannot</span>
<span class='co'># fix formation fractions when using the ilr transformation, we can turn of</span>
<span class='co'># the sink in the model generation</span>
@@ -215,28 +215,28 @@
quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span><span class='op'>(</span><span class='va'>fit.2</span><span class='op'>)</span><span class='op'>$</span><span class='va'>bpar</span>
</div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
-#&gt; T245_0 1.038550e+02 2.1623653027 48.028439 4.993108e-19 99.271020526
-#&gt; k_T245 4.337042e-02 0.0018343666 23.643268 3.573555e-14 0.039650977
-#&gt; k_phenol 4.050582e-01 0.1177237248 3.440752 1.679252e-03 0.218746585
-#&gt; k_anisole 6.678741e-03 0.0006829745 9.778903 1.872894e-08 0.005377083
-#&gt; f_T245_to_phenol 6.227599e-01 0.0342197865 18.198825 2.039410e-12 0.547975628
+#&gt; T245_0 1.038550e+02 2.1623653066 48.028439 4.993108e-19 99.271020284
+#&gt; k_T245 4.337042e-02 0.0018343666 23.643268 3.573556e-14 0.039650976
+#&gt; k_phenol 4.050582e-01 0.1177237473 3.440752 1.679254e-03 0.218746587
+#&gt; k_anisole 6.678742e-03 0.0006829745 9.778903 1.872894e-08 0.005377083
+#&gt; f_T245_to_phenol 6.227599e-01 0.0342197875 18.198824 2.039411e-12 0.547975637
#&gt; sigma 2.514628e+00 0.3790944250 6.633250 2.875782e-06 1.710983655
#&gt; Upper
-#&gt; T245_0 108.43904097
+#&gt; T245_0 108.43904074
#&gt; k_T245 0.04743877
-#&gt; k_phenol 0.75005577
+#&gt; k_phenol 0.75005585
#&gt; k_anisole 0.00829550
-#&gt; f_T245_to_phenol 0.69212306
+#&gt; f_T245_to_phenol 0.69212308
#&gt; sigma 3.31827222</div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>fit.1</span><span class='op'>)</span>
</div><div class='output co'>#&gt; $ff
#&gt; T245_phenol T245_sink phenol_anisole phenol_sink
-#&gt; 6.227599e-01 3.772401e-01 1.000000e+00 6.894640e-11
+#&gt; 6.227599e-01 3.772401e-01 1.000000e+00 3.773626e-10
#&gt;
#&gt; $distimes
#&gt; DT50 DT90
#&gt; T245 15.982025 53.09114
#&gt; phenol 1.711229 5.68458
-#&gt; anisole 103.784092 344.76329
+#&gt; anisole 103.784093 344.76329
#&gt; </div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span><span class='op'>(</span><span class='va'>fit.2</span><span class='op'>)</span>
</div><div class='img'><img src='mccall81_245T-1.png' alt='' width='700' height='433' /></div><div class='input'> <span class='co'># }</span>
</div></pre>

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