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@@ -8,11 +8,13 @@
 
 <title>Calculate the minimum error to assume in order to pass the variance test — mkinerrmin • mkin</title>
 
+
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@@ -32,14 +34,15 @@
 
 
 
-<meta property="og:title" content="Calculate the minimum error to assume in order to pass the variance test — mkinerrmin" />
 
-<meta property="og:description" content="This function finds the smallest relative error still resulting in passing the
-chi-squared test as defined in the FOCUS kinetics report from 2006." />
+<meta property="og:title" content="Calculate the minimum error to assume in order to pass the variance test — mkinerrmin" />
+<meta property="og:description" content="This function finds the smallest relative error still resulting in passing
+the chi-squared test as defined in the FOCUS kinetics report from 2006." />
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+
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@@ -110,7 +113,6 @@ chi-squared test as defined in the FOCUS kinetics report from 2006." />
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@@ -132,14 +134,12 @@ chi-squared test as defined in the FOCUS kinetics report from 2006." />
     </div>
 
     <div class="ref-description">
-    
-    <p>This function finds the smallest relative error still resulting in passing the
-chi-squared test as defined in the FOCUS kinetics report from 2006.</p>
-    
+    <p>This function finds the smallest relative error still resulting in passing
+the chi-squared test as defined in the FOCUS kinetics report from 2006.</p>
     </div>
 
     <pre class="usage"><span class='fu'>mkinerrmin</span>(<span class='no'>fit</span>, <span class='kw'>alpha</span> <span class='kw'>=</span> <span class='fl'>0.05</span>)</pre>
-    
+
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
@@ -152,35 +152,33 @@ chi-squared test as defined in the FOCUS kinetics report from 2006.</p>
       <td><p>The confidence level chosen for the chi-squared test.</p></td>
     </tr>
     </table>
-    
+
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
 
     <p>A dataframe with the following components:</p>
-<dt>err.min</dt><dd><p>The relative error, expressed as a fraction.</p></dd>
-  <dt>n.optim</dt><dd><p>The number of optimised parameters attributed to the data series.</p></dd>
-  <dt>df</dt><dd><p>The number of remaining degrees of freedom for the chi2 error level
-    calculations.  Note that mean values are used for the chi2 statistic and
-    therefore every time point with observed values in the series only counts
-    one time.</p></dd>
-  The dataframe has one row for the total dataset and one further row for
-  each observed state variable in the model.
+<dt>err.min</dt><dd><p>The
+relative error, expressed as a fraction.</p></dd> <dt>n.optim</dt><dd><p>The number of
+optimised parameters attributed to the data series.</p></dd> <dt>df</dt><dd><p>The number of
+remaining degrees of freedom for the chi2 error level calculations.  Note
+that mean values are used for the chi2 statistic and therefore every time
+point with observed values in the series only counts one time.</p></dd> The
+dataframe has one row for the total dataset and one further row for each
+observed state variable in the model.
 
-    
     <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>
 
     <p>This function is used internally by <code><a href='summary.mkinfit.html'>summary.mkinfit</a></code>.</p>
-    
     <h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
 
-    <p>FOCUS (2006) &#8220;Guidance Document on Estimating Persistence and
-  Degradation Kinetics from Environmental Fate Studies on Pesticides in EU
-  Registration&#8221; Report of the FOCUS Work Group on Degradation Kinetics,
-  EC Document Reference Sanco/10058/2005 version 2.0, 434 pp,
-  <a href='http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics'>http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p>
-    
+    <p>FOCUS (2006) &#8220;Guidance Document on Estimating Persistence
+and Degradation Kinetics from Environmental Fate Studies on Pesticides in EU
+Registration&#8221; Report of the FOCUS Work Group on Degradation Kinetics, EC
+Document Reference Sanco/10058/2005 version 2.0, 434 pp,
+<a href='http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics'>http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p>
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='no'>SFO_SFO</span> <span class='kw'>=</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"m1"</span>),
+    <pre class="examples"><div class='input'>
+<span class='no'>SFO_SFO</span> <span class='kw'>=</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"m1"</span>),
                   <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>),
                   <span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
 <span class='no'>fit_FOCUS_D</span> <span class='kw'>=</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/Round.html'>round</a></span>(<span class='fu'>mkinerrmin</span>(<span class='no'>fit_FOCUS_D</span>), <span class='fl'>4</span>)</div><div class='output co'>#&gt;          err.min n.optim df
@@ -192,19 +190,16 @@ chi-squared test as defined in the FOCUS kinetics report from 2006.</p>
 #&gt; All data  0.1544       4 13
 #&gt; parent    0.1659       2  7
 #&gt; m1        0.1095       2  6</div><div class='input'># }
+
 </div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
     <ul class="nav nav-pills nav-stacked">
       <li><a href="#arguments">Arguments</a></li>
-      
       <li><a href="#value">Value</a></li>
-
       <li><a href="#details">Details</a></li>
-
       <li><a href="#references">References</a></li>
-      
       <li><a href="#examples">Examples</a></li>
     </ul>