Static documentation rebuilt by pkgdown

1 files changed, 34 insertions, 38 deletions

diff --git a/docs/reference/mkinresplot.html b/docs/reference/mkinresplot.html
index eea5b218..1ac2cdbe 100644
--- a/docs/reference/mkinresplot.html
+++ b/docs/reference/mkinresplot.html
@@ -8,11 +8,13 @@
 
 <title>Function to plot residuals stored in an mkin object — mkinresplot • mkin</title>
 
+
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@@ -32,16 +34,17 @@
 
 
 
-<meta property="og:title" content="Function to plot residuals stored in an mkin object — mkinresplot" />
 
-<meta property="og:description" content="This function plots the residuals for the specified subset of the 
-  observed variables from an mkinfit object. A combined plot of the fitted
-  model and the residuals can be obtained using plot.mkinfit
-  using the argument show_residuals = TRUE." />
+<meta property="og:title" content="Function to plot residuals stored in an mkin object — mkinresplot" />
+<meta property="og:description" content="This function plots the residuals for the specified subset of the observed
+variables from an mkinfit object. A combined plot of the fitted model and
+the residuals can be obtained using plot.mkinfit using the
+argument show_residuals = TRUE." />
 <meta name="twitter:card" content="summary" />
 
 
 
+
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@@ -112,7 +115,6 @@
   <a href="../news/index.html">News</a>
 </li>
       </ul>
-      
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
@@ -134,23 +136,17 @@
     </div>
 
     <div class="ref-description">
-    
-    <p>This function plots the residuals for the specified subset of the 
-  observed variables from an mkinfit object. A combined plot of the fitted
-  model and the residuals can be obtained using <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code>
-  using the argument <code>show_residuals = TRUE</code>.</p>
-    
+    <p>This function plots the residuals for the specified subset of the observed
+variables from an mkinfit object. A combined plot of the fitted model and
+the residuals can be obtained using <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code> using the
+argument <code>show_residuals = TRUE</code>.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>mkinresplot</span>(<span class='no'>object</span>,
-    <span class='kw'>obs_vars</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/names.html'>names</a></span>(<span class='no'>object</span>$<span class='no'>mkinmod</span>$<span class='no'>map</span>),
-    <span class='kw'>xlim</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>, <span class='fl'>1.1</span> * <span class='fu'><a href='https://rdrr.io/r/base/Extremes.html'>max</a></span>(<span class='no'>object</span>$<span class='no'>data</span>$<span class='no'>time</span>)),
-    <span class='kw'>xlab</span> <span class='kw'>=</span> <span class='st'>"Time"</span>, <span class='kw'>ylab</span> <span class='kw'>=</span> <span class='st'>"Residual"</span>,
-    <span class='kw'>maxabs</span> <span class='kw'>=</span> <span class='st'>"auto"</span>, <span class='kw'>legend</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='st'>"topright"</span>,
-    <span class='kw'>col_obs</span> <span class='kw'>=</span> <span class='st'>"auto"</span>, <span class='kw'>pch_obs</span> <span class='kw'>=</span> <span class='st'>"auto"</span>,
-    <span class='kw'>frame</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
-    <span class='no'>...</span>)</pre>
-    
+    <pre class="usage"><span class='fu'>mkinresplot</span>(<span class='no'>object</span>, <span class='kw'>obs_vars</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/names.html'>names</a></span>(<span class='no'>object</span>$<span class='no'>mkinmod</span>$<span class='no'>map</span>), <span class='kw'>xlim</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>,
+  <span class='fl'>1.1</span> * <span class='fu'><a href='https://rdrr.io/r/base/Extremes.html'>max</a></span>(<span class='no'>object</span>$<span class='no'>data</span>$<span class='no'>time</span>)), <span class='kw'>xlab</span> <span class='kw'>=</span> <span class='st'>"Time"</span>, <span class='kw'>ylab</span> <span class='kw'>=</span> <span class='st'>"Residual"</span>,
+  <span class='kw'>maxabs</span> <span class='kw'>=</span> <span class='st'>"auto"</span>, <span class='kw'>legend</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='st'>"topright"</span>,
+  <span class='kw'>col_obs</span> <span class='kw'>=</span> <span class='st'>"auto"</span>, <span class='kw'>pch_obs</span> <span class='kw'>=</span> <span class='st'>"auto"</span>, <span class='kw'>frame</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='no'>...</span>)</pre>
+
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
@@ -160,8 +156,9 @@
     </tr>
     <tr>
       <th>obs_vars</th>
-      <td><p>A character vector of names of the observed variables for which residuals
-    should be plotted. Defaults to all observed variables in the model</p></td>
+      <td><p>A character vector of names of the observed variables for
+which residuals should be plotted. Defaults to all observed variables in
+the model</p></td>
     </tr>
     <tr>
       <th>xlim</th>
@@ -173,12 +170,13 @@
     </tr>
     <tr>
       <th>ylab</th>
-      <td><p>Label for the y axis. Defaults to "Residual [% of applied radioactivity]".</p></td>
+      <td><p>Label for the y axis. Defaults to "Residual [% of applied
+radioactivity]".</p></td>
     </tr>
     <tr>
       <th>maxabs</th>
-      <td><p>Maximum absolute value of the residuals. This is used for the scaling of
-    the y axis and defaults to "auto".</p></td>
+      <td><p>Maximum absolute value of the residuals. This is used for the
+scaling of the y axis and defaults to "auto".</p></td>
     </tr>
     <tr>
       <th>legend</th>
@@ -186,8 +184,8 @@
     </tr>
     <tr>
       <th>lpos</th>
-      <td><p>Where should the legend be placed? Default is "topright". Will be passed on to
-    <code><a href='https://rdrr.io/r/graphics/legend.html'>legend</a></code>.</p></td>
+      <td><p>Where should the legend be placed? Default is "topright". Will
+be passed on to <code><a href='https://rdrr.io/r/graphics/legend.html'>legend</a></code>.</p></td>
     </tr>
     <tr>
       <th>col_obs</th>
@@ -206,29 +204,27 @@
       <td><p>further arguments passed to <code><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></code>.</p></td>
     </tr>
     </table>
-    
+
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
 
-    <p>Nothing is returned by this function, as it is called for its side effect, namely to produce a plot.</p>
-    
+    <p>Nothing is returned by this function, as it is called for its side
+  effect, namely to produce a plot.</p>
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
-    <div class='dont-index'><p><code><a href='mkinplot.html'>mkinplot</a></code>, for a way to plot the data and the fitted lines of the
- mkinfit object.</p></div>
-    
+    <div class='dont-index'><p><code><a href='mkinplot.html'>mkinplot</a></code>, for a way to plot the data and the fitted
+  lines of the mkinfit object.</p></div>
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='no'>model</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>model</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'>mkinresplot</span>(<span class='no'>fit</span>, <span class='st'>"m1"</span>)</div><div class='img'><img src='mkinresplot-1.png' alt='' width='700' height='433' /></div></pre>
+    <pre class="examples"><div class='input'>
+<span class='no'>model</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>model</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'>mkinresplot</span>(<span class='no'>fit</span>, <span class='st'>"m1"</span>)</div><div class='img'><img src='mkinresplot-1.png' alt='' width='700' height='433' /></div><div class='input'>
+</div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
     <ul class="nav nav-pills nav-stacked">
       <li><a href="#arguments">Arguments</a></li>
-      
       <li><a href="#value">Value</a></li>
-
       <li><a href="#see-also">See also</a></li>
-      
       <li><a href="#examples">Examples</a></li>
     </ul>