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authorJohannes Ranke <jranke@uni-bremen.de>2022-05-18 21:26:17 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-05-18 21:26:17 +0200
commit91c5db736a4d3f2290a0cc5698fb4e35ae7bda59 (patch)
tree8e9e34d18f055936172329c1248e6e2ff136bff9 /docs/reference/mmkin.html
parentea57db98cef3fb882f7bd9656b44f270e7bded38 (diff)
Remove outdated comment in FOCUS L vignette, update docs
This also adds the first benchmark results obtained on my laptop system
Diffstat (limited to 'docs/reference/mmkin.html')
-rw-r--r--docs/reference/mmkin.html14
1 files changed, 8 insertions, 6 deletions
diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html
index 1ca0190a..cbb46ab0 100644
--- a/docs/reference/mmkin.html
+++ b/docs/reference/mmkin.html
@@ -167,10 +167,10 @@ plotting.</p></div>
<span class="r-in"></span>
<span class="r-in"><span class="va">time_default</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> user system elapsed </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 4.710 0.665 1.757 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 35.152 1.185 8.439 </span>
<span class="r-in"><span class="va">time_1</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> user system elapsed </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 5.644 0.001 5.645 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 14.744 0.008 14.768 </span>
<span class="r-in"></span>
<span class="r-in"><span class="fu"><a href="endpoints.html">endpoints</a></span><span class="op">(</span><span class="va">fits.0</span><span class="op">[[</span><span class="st">"SFO_lin"</span>, <span class="fl">2</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ff</span>
@@ -180,8 +180,8 @@ plotting.</p></div>
<span class="r-out co"><span class="r-pr">#&gt;</span> $distimes</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DT50 DT90</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent 0.877769 2.915885</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> M1 2.325744 7.725956</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> M2 33.720100 112.015749</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> M1 2.325744 7.725955</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> M2 33.720111 112.015785</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-in"></span>
<span class="r-in"><span class="co"># plot.mkinfit handles rows or columns of mmkin result objects</span></span>
@@ -214,10 +214,12 @@ plotting.</p></div>
<span class="r-out co"><span class="r-pr">#&gt;</span> dataset</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> model A B C D </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> SFO OK OK OK OK</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> FOMC OK OK OK OK</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> FOMC C OK OK OK</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> DFOP OK OK OK OK</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> OK: No warnings</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> C: Optimisation did not converge:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> false convergence (8)</span>
<span class="r-in"><span class="co"># We get false convergence for the FOMC fit to FOCUS_2006_A because this</span></span>
<span class="r-in"><span class="co"># dataset is really SFO, and the FOMC fit is overparameterised</span></span>
<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/parallel/makeCluster.html" class="external-link">stopCluster</a></span><span class="op">(</span><span class="va">cl</span><span class="op">)</span></span>
@@ -237,7 +239,7 @@ plotting.</p></div>
</div>
<div class="pkgdown">
- <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.2.</p>
+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.3.</p>
</div>
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