Static documentation rebuilt by pkgdown

1 files changed, 48 insertions, 33 deletions

diff --git a/docs/reference/nafta.html b/docs/reference/nafta.html
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+++ b/docs/reference/nafta.html
@@ -8,11 +8,13 @@
 
 <title>Evaluate parent kinetics using the NAFTA guidance — nafta • mkin</title>
 
+
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@@ -32,15 +34,18 @@
 
 
 
-<meta property="og:title" content="Evaluate parent kinetics using the NAFTA guidance — nafta" />
 
-<meta property="og:description" content="The function fits the SFO, IORE and DFOP models using
-  mmkin and returns an object of class
-  nafta that has methods for printing and plotting." />
+<meta property="og:title" content="Evaluate parent kinetics using the NAFTA guidance — nafta" />
+<meta property="og:description" content="The function fits the SFO, IORE and DFOP models using mmkin
+and returns an object of class nafta that has methods for printing
+and plotting.
+Print nafta objects. The results for the three models are printed in the
+order of increasing model complexity, i.e. SFO, then IORE, and finally DFOP." />
 <meta name="twitter:card" content="summary" />
 
 
 
+
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@@ -111,7 +116,6 @@
   <a href="../news/index.html">News</a>
 </li>
       </ul>
-      
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
@@ -133,24 +137,27 @@
     </div>
 
     <div class="ref-description">
-    
-    <p>The function fits the SFO, IORE and DFOP models using
-  <code><a href='mmkin.html'>mmkin</a></code> and returns an object of class
-  <code>nafta</code> that has methods for printing and plotting.</p>
-    
+    <p>The function fits the SFO, IORE and DFOP models using <code><a href='mmkin.html'>mmkin</a></code>
+and returns an object of class <code>nafta</code> that has methods for printing
+and plotting.</p>
+<p>Print nafta objects. The results for the three models are printed in the
+order of increasing model complexity, i.e. SFO, then IORE, and finally DFOP.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>nafta</span>(<span class='no'>ds</span>, <span class='kw'>title</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='no'>...</span>)</pre>
-    
+    <pre class="usage"><span class='fu'>nafta</span>(<span class='no'>ds</span>, <span class='kw'>title</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='no'>...</span>)
+
+<span class='co'># S3 method for nafta</span>
+<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>x</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>3</span>, <span class='no'>...</span>)</pre>
+
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
       <th>ds</th>
-      <td><p>A dataframe that must contain one variable called "time" with the time
-    values specified by the <code>time</code> argument, one column called "name" with
-    the grouping of the observed values, and finally one column of observed
-    values called "value".</p></td>
+      <td><p>A dataframe that must contain one variable called "time" with the
+time values specified by the <code>time</code> argument, one column called
+"name" with the grouping of the observed values, and finally one column of
+observed values called "value".</p></td>
     </tr>
     <tr>
       <th>title</th>
@@ -162,31 +169,41 @@
     </tr>
     <tr>
       <th>...</th>
-      <td><p>Further arguments passed to <code><a href='mmkin.html'>mmkin</a></code>.</p></td>
+      <td><p>Further arguments passed to <code><a href='mmkin.html'>mmkin</a></code> (not for the
+printing method).</p></td>
+    </tr>
+    <tr>
+      <th>x</th>
+      <td><p>An <code>nafta</code> object.</p></td>
+    </tr>
+    <tr>
+      <th>digits</th>
+      <td><p>Number of digits to be used for printing parameters and
+dissipation times.</p></td>
     </tr>
     </table>
-    
-    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
 
-    <p>An list of class <code>nafta</code>. The list element named "mmkin" is the
-  <code><a href='mmkin.html'>mmkin</a></code> object containing the fits of the three models.
-  The list element named "title" contains the title of the dataset used.
-  The list element "data" contains the dataset used in the fits.</p>
-    
     <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
 
-    <p>NAFTA (2011) Guidance for evaluating and calculating degradation kinetics
-  in environmental media. NAFTA Technical Working Group on Pesticides
+    <p>NAFTA (2011) Guidance for evaluating and calculating degradation
+  kinetics in environmental media. NAFTA Technical Working Group on
+  Pesticides
   <a href='https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/guidance-evaluating-and-calculating-degradation'>https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/guidance-evaluating-and-calculating-degradation</a>
   accessed 2019-02-22</p>
 <p>US EPA (2015) Standard Operating Procedure for Using the NAFTA Guidance to
   Calculate Representative Half-life Values and Characterizing Pesticide
   Degradation
   <a href='https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance'>https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance</a></p>
-    
+    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+
+    <p>An list of class <code>nafta</code>. The list element named "mmkin" is the
+  <code><a href='mmkin.html'>mmkin</a></code> object containing the fits of the three models. The
+  list element named "title" contains the title of the dataset used. The
+  list element "data" contains the dataset used in the fits.</p>
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'>  <span class='no'>nafta_evaluation</span> <span class='kw'>&lt;-</span> <span class='fu'>nafta</span>(<span class='no'>NAFTA_SOP_Appendix_D</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>)</div><div class='output co'>#&gt; <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life of the IORE model is longer than the one corresponding</span></div><div class='output co'>#&gt; <span class='message'>to the terminal degradation rate found with the DFOP model.</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life obtained from the DFOP model may be used</span></div><div class='input'>  <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='output co'>#&gt; Sums of squares:
+    <pre class="examples"><div class='input'>
+  <span class='no'>nafta_evaluation</span> <span class='kw'>&lt;-</span> <span class='fu'>nafta</span>(<span class='no'>NAFTA_SOP_Appendix_D</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>)</div><div class='output co'>#&gt; <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life of the IORE model is longer than the one corresponding</span></div><div class='output co'>#&gt; <span class='message'>to the terminal degradation rate found with the DFOP model.</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life obtained from the DFOP model may be used</span></div><div class='input'>  <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='output co'>#&gt; Sums of squares:
 #&gt;       SFO      IORE      DFOP 
 #&gt; 1378.6832  615.7730  517.8836 
 #&gt; 
@@ -223,17 +240,15 @@
 #&gt; DFOP  429    2380      841
 #&gt; 
 #&gt; Representative half-life:
-#&gt; [1] 841.41</div><div class='input'>  <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='img'><img src='nafta-1.png' alt='' width='700' height='433' /></div></pre>
+#&gt; [1] 841.41</div><div class='input'>  <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='img'><img src='nafta-1.png' alt='' width='700' height='433' /></div><div class='input'>
+</div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
     <ul class="nav nav-pills nav-stacked">
       <li><a href="#arguments">Arguments</a></li>
-      
-      <li><a href="#value">Value</a></li>
-
       <li><a href="#source">Source</a></li>
-      
+      <li><a href="#value">Value</a></li>
       <li><a href="#examples">Examples</a></li>
     </ul>