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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-05-27 07:12:51 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-05-27 07:12:51 +0200 |
| commit | b5ee48a86e4b1d4c05aaadb80b44954e2e994ebc (patch) | |
| tree | aeeeaf623e4a6102b9ca2440cf0e32ff7a7a1d25 /docs/reference/nlme.html | |
| parent | a77a10ea6c607346778ba0700b3b66ac393101a2 (diff) | |
Add docs generated using released version 0.9.52
Diffstat (limited to 'docs/reference/nlme.html')
| -rw-r--r-- | docs/reference/nlme.html | 31 |
1 files changed, 14 insertions, 17 deletions
diff --git a/docs/reference/nlme.html b/docs/reference/nlme.html index 3462e52e..85929929 100644 --- a/docs/reference/nlme.html +++ b/docs/reference/nlme.html @@ -43,7 +43,7 @@ <meta property="og:description" content="These functions facilitate setting up a nonlinear mixed effects model for an mmkin row object. An mmkin row object is essentially a list of mkinfit objects that have been obtained by fitting the same model to a list of -datasets. They are used internally by the nlme.mmkin() method." /> +datasets." /> @@ -75,7 +75,7 @@ datasets. They are used internally by the nlme.mmkin() method." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.2</span> </span> </div> @@ -112,9 +112,6 @@ datasets. They are used internally by the nlme.mmkin() method." /> <li> <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a> </li> - <li> - <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a> - </li> </ul> </li> <li> @@ -150,7 +147,7 @@ datasets. They are used internally by the nlme.mmkin() method." /> <p>These functions facilitate setting up a nonlinear mixed effects model for an mmkin row object. An mmkin row object is essentially a list of mkinfit objects that have been obtained by fitting the same model to a list of -datasets. They are used internally by the <code><a href='nlme.mmkin.html'>nlme.mmkin()</a></code> method.</p> +datasets.</p> </div> <pre class="usage"><span class='fu'>nlme_function</span>(<span class='no'>object</span>) @@ -178,7 +175,7 @@ datasets. They are used internally by the <code><a href='nlme.mmkin.html'>nlme.m <p>If random is FALSE (default), a named vector containing mean values of the fitted degradation model parameters. If random is TRUE, a list with fixed and random effects, in the format required by the start argument of -nlme for the case of a single grouping variable ds.</p> +nlme for the case of a single grouping variable ds?</p> <p>A <code><a href='https://rdrr.io/pkg/nlme/man/groupedData.html'>groupedData</a></code> object</p> <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2> @@ -225,28 +222,28 @@ nlme for the case of a single grouping variable ds.</p> #> Model: value ~ nlme_f(name, time, parent_0, log_k_parent_sink) #> Data: grouped_data #> AIC BIC logLik -#> 298.2781 307.7372 -144.1391 +#> 252.7798 262.1358 -121.3899 #> #> Random effects: #> Formula: list(parent_0 ~ 1, log_k_parent_sink ~ 1) #> Level: ds #> Structure: Diagonal -#> parent_0 log_k_parent_sink Residual -#> StdDev: 0.9374733 0.7098105 3.83543 +#> parent_0 log_k_parent_sink Residual +#> StdDev: 0.004139378 0.6800778 2.489396 #> #> Fixed effects: parent_0 + log_k_parent_sink ~ 1 -#> Value Std.Error DF t-value p-value -#> parent_0 101.76838 1.1445444 45 88.91606 0 -#> log_k_parent_sink -3.05444 0.4195622 45 -7.28008 0 +#> Value Std.Error DF t-value p-value +#> parent_0 101.74884 0.6456057 44 157.60213 0 +#> log_k_parent_sink -3.05575 0.4015812 44 -7.60929 0 #> Correlation: #> prnt_0 -#> log_k_parent_sink 0.034 +#> log_k_parent_sink 0.026 #> #> Standardized Within-Group Residuals: -#> Min Q1 Med Q3 Max -#> -2.6169360 -0.2185329 0.0574070 0.5720937 3.0459868 +#> Min Q1 Med Q3 Max +#> -2.13168782 -0.68780415 0.08282907 0.85913228 2.95298904 #> -#> Number of Observations: 49 +#> Number of Observations: 48 #> Number of Groups: 3 </div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='fu'><a href='https://rdrr.io/pkg/nlme/man/augPred.html'>augPred</a></span>(<span class='no'>m_nlme</span>, <span class='kw'>level</span> <span class='kw'>=</span> <span class='fl'>0</span>:<span class='fl'>1</span>), <span class='kw'>layout</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>3</span>, <span class='fl'>1</span>))</div><div class='img'><img src='nlme-1.png' alt='' width='700' height='433' /></div><div class='input'># augPred does not seem to work on fits with more than one state # variable |