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authorJohannes Ranke <jranke@uni-bremen.de>2022-03-02 18:03:54 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-03-02 18:03:54 +0100
commit2bb59c88d49b193f278916ad9cc4de83c0de9604 (patch)
treef286bba254d7c5f2d32eeb2b11f6148938b0e1e1 /docs/reference/parms.html
parent351248d07f810ccb6c497633a02cd48ee35526e6 (diff)
Make tests more platform independent, update docs
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diff --git a/docs/reference/parms.html b/docs/reference/parms.html
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model parameters, in order to avoid working with a fitted model without
-considering the error structure that was assumed for the fit." />
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@@ -74,13 +19,12 @@ considering the error structure that was assumed for the fit." />
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- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.4</span>
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@@ -89,8 +33,7 @@ considering the error structure that was assumed for the fit." />
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@@ -100,6 +43,9 @@ considering the error structure that was assumed for the fit." />
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
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+ <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ </li>
+ <li>
<a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
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@@ -114,34 +60,27 @@ considering the error structure that was assumed for the fit." />
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<a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
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<div class="page-header">
<h1>Extract model parameters from mkinfit models</h1>
- <small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/parms.mkinfit.R'><code>R/parms.mkinfit.R</code></a></small>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/parms.mkinfit.R" class="external-link"><code>R/parms.mkinfit.R</code></a></small>
<div class="hidden name"><code>parms.Rd</code></div>
</div>
@@ -151,148 +90,147 @@ model parameters, in order to avoid working with a fitted model without
considering the error structure that was assumed for the fit.</p>
</div>
- <pre class="usage"><span class='fu'>parms</span><span class='op'>(</span><span class='va'>object</span>, <span class='va'>...</span><span class='op'>)</span>
-
-<span class='co'># S3 method for mkinfit</span>
-<span class='fu'>parms</span><span class='op'>(</span><span class='va'>object</span>, transformed <span class='op'>=</span> <span class='cn'>FALSE</span>, <span class='va'>...</span><span class='op'>)</span>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">parms</span><span class="op">(</span><span class="va">object</span>, <span class="va">...</span><span class="op">)</span>
-<span class='co'># S3 method for mmkin</span>
-<span class='fu'>parms</span><span class='op'>(</span><span class='va'>object</span>, transformed <span class='op'>=</span> <span class='cn'>FALSE</span>, <span class='va'>...</span><span class='op'>)</span></pre>
+<span class="co"># S3 method for mkinfit</span>
+<span class="fu">parms</span><span class="op">(</span><span class="va">object</span>, transformed <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span>
- <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
- <table class="ref-arguments">
- <colgroup><col class="name" /><col class="desc" /></colgroup>
- <tr>
- <th>object</th>
- <td><p>A fitted model object. Methods are implemented for
-<code><a href='mkinfit.html'>mkinfit()</a></code> objects and for <code><a href='mmkin.html'>mmkin()</a></code> objects.</p></td>
- </tr>
- <tr>
- <th>...</th>
- <td><p>Not used</p></td>
- </tr>
- <tr>
- <th>transformed</th>
- <td><p>Should the parameters be returned
-as used internally during the optimisation?</p></td>
- </tr>
- </table>
-
- <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+<span class="co"># S3 method for mmkin</span>
+<span class="fu">parms</span><span class="op">(</span><span class="va">object</span>, transformed <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span></code></pre></div>
+ </div>
+ <div id="arguments">
+ <h2>Arguments</h2>
+ <dl><dt>object</dt>
+<dd><p>A fitted model object. Methods are implemented for
+<code><a href="mkinfit.html">mkinfit()</a></code> objects and for <code><a href="mmkin.html">mmkin()</a></code> objects.</p></dd>
+<dt>...</dt>
+<dd><p>Not used</p></dd>
+<dt>transformed</dt>
+<dd><p>Should the parameters be returned
+as used internally during the optimisation?</p></dd>
+</dl></div>
+ <div id="value">
+ <h2>Value</h2>
<p>For mkinfit objects, a numeric vector of fitted model parameters.
For mmkin row objects, a matrix with the parameters with a
row for each dataset. If the mmkin object has more than one row, a list of
such matrices is returned.</p>
+ </div>
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='co'># mkinfit objects</span>
-<span class='va'>fit</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='va'>FOCUS_2006_C</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-<span class='fu'>parms</span><span class='op'>(</span><span class='va'>fit</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; parent_0 k_parent sigma
-#&gt; 82.4921598 0.3060633 4.6730124 </div><div class='input'><span class='fu'>parms</span><span class='op'>(</span><span class='va'>fit</span>, transformed <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; parent_0 log_k_parent sigma
-#&gt; 82.492160 -1.183963 4.673012 </div><div class='input'>
-<span class='co'># mmkin objects</span>
-<span class='va'>ds</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/lapply.html'>lapply</a></span><span class='op'>(</span><span class='va'>experimental_data_for_UBA_2019</span><span class='op'>[</span><span class='fl'>6</span><span class='op'>:</span><span class='fl'>10</span><span class='op'>]</span>,
- <span class='kw'>function</span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span> <span class='fu'><a href='https://rdrr.io/r/base/subset.html'>subset</a></span><span class='op'>(</span><span class='va'>x</span><span class='op'>$</span><span class='va'>data</span><span class='op'>[</span><span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"name"</span>, <span class='st'>"time"</span>, <span class='st'>"value"</span><span class='op'>)</span><span class='op'>]</span><span class='op'>)</span><span class='op'>)</span>
-<span class='fu'><a href='https://rdrr.io/r/base/names.html'>names</a></span><span class='op'>(</span><span class='va'>ds</span><span class='op'>)</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span><span class='op'>(</span><span class='st'>"Dataset"</span>, <span class='fl'>6</span><span class='op'>:</span><span class='fl'>10</span><span class='op'>)</span>
-<span class='co'># \dontrun{</span>
-<span class='va'>fits</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mmkin.html'>mmkin</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"FOMC"</span>, <span class='st'>"DFOP"</span><span class='op'>)</span>, <span class='va'>ds</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, cores <span class='op'>=</span> <span class='fl'>1</span><span class='op'>)</span>
-<span class='fu'>parms</span><span class='op'>(</span><span class='va'>fits</span><span class='op'>[</span><span class='st'>"SFO"</span>, <span class='op'>]</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10
-#&gt; parent_0 88.52275400 82.666781678 86.8547308 91.7779306 82.14809450
-#&gt; k_parent 0.05794659 0.009647805 0.2102974 0.1232258 0.00720421
-#&gt; sigma 5.15274487 7.040168584 3.6769645 6.4669234 6.50457673</div><div class='input'><span class='fu'>parms</span><span class='op'>(</span><span class='va'>fits</span><span class='op'>[</span>, <span class='fl'>2</span><span class='op'>]</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; $SFO
-#&gt; Dataset 7
-#&gt; parent_0 82.666781678
-#&gt; k_parent 0.009647805
-#&gt; sigma 7.040168584
-#&gt;
-#&gt; $FOMC
-#&gt; Dataset 7
-#&gt; parent_0 92.6837649
-#&gt; alpha 0.4967832
-#&gt; beta 14.1451255
-#&gt; sigma 1.9167519
-#&gt;
-#&gt; $DFOP
-#&gt; Dataset 7
-#&gt; parent_0 91.058971589
-#&gt; k1 0.044946770
-#&gt; k2 0.002868336
-#&gt; g 0.526942415
-#&gt; sigma 2.221302196
-#&gt; </div><div class='input'><span class='fu'>parms</span><span class='op'>(</span><span class='va'>fits</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; $SFO
-#&gt; Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10
-#&gt; parent_0 88.52275400 82.666781678 86.8547308 91.7779306 82.14809450
-#&gt; k_parent 0.05794659 0.009647805 0.2102974 0.1232258 0.00720421
-#&gt; sigma 5.15274487 7.040168584 3.6769645 6.4669234 6.50457673
-#&gt;
-#&gt; $FOMC
-#&gt; Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10
-#&gt; parent_0 95.558575 92.6837649 90.719787 98.383939 94.8481459
-#&gt; alpha 1.338667 0.4967832 1.639099 1.074460 0.2805272
-#&gt; beta 13.033315 14.1451255 5.007077 4.397126 6.9052224
-#&gt; sigma 1.847671 1.9167519 1.066063 3.146056 1.6222778
-#&gt;
-#&gt; $DFOP
-#&gt; Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10
-#&gt; parent_0 96.55213663 91.058971589 90.34509493 98.14858820 94.311323734
-#&gt; k1 0.21954588 0.044946770 0.41232288 0.31697588 0.080663857
-#&gt; k2 0.02957934 0.002868336 0.07581766 0.03260384 0.003425417
-#&gt; g 0.44845068 0.526942415 0.66091967 0.65322767 0.342652880
-#&gt; sigma 1.35690468 2.221302196 1.34169076 2.87159846 1.942067831
-#&gt; </div><div class='input'><span class='fu'>parms</span><span class='op'>(</span><span class='va'>fits</span>, transformed <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; $SFO
-#&gt; Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10
-#&gt; parent_0 88.522754 82.666782 86.854731 91.777931 82.148094
-#&gt; log_k_parent -2.848234 -4.641025 -1.559232 -2.093737 -4.933090
-#&gt; sigma 5.152745 7.040169 3.676964 6.466923 6.504577
-#&gt;
-#&gt; $FOMC
-#&gt; Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10
-#&gt; parent_0 95.5585751 92.6837649 90.7197870 98.38393897 94.848146
-#&gt; log_alpha 0.2916741 -0.6996015 0.4941466 0.07181816 -1.271085
-#&gt; log_beta 2.5675088 2.6493701 1.6108523 1.48095106 1.932278
-#&gt; sigma 1.8476712 1.9167519 1.0660627 3.14605557 1.622278
-#&gt;
-#&gt; $DFOP
-#&gt; Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10
-#&gt; parent_0 96.5521366 91.0589716 90.3450949 98.1485882 94.3113237
-#&gt; log_k1 -1.5161940 -3.1022764 -0.8859486 -1.1489296 -2.5174647
-#&gt; log_k2 -3.5206791 -5.8540232 -2.5794240 -3.4233253 -5.6765322
-#&gt; g_qlogis -0.2069326 0.1078741 0.6673953 0.6332573 -0.6514943
-#&gt; sigma 1.3569047 2.2213022 1.3416908 2.8715985 1.9420678
-#&gt; </div><div class='input'><span class='co'># }</span>
-</div></pre>
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span class="co"># mkinfit objects</span></span>
+<span class="r-in"><span class="va">fit</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-in"><span class="fu">parms</span><span class="op">(</span><span class="va">fit</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 k_parent sigma </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 82.4921598 0.3060633 4.6730124 </span>
+<span class="r-in"><span class="fu">parms</span><span class="op">(</span><span class="va">fit</span>, transformed <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 log_k_parent sigma </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 82.492160 -1.183963 4.673012 </span>
+<span class="r-in"></span>
+<span class="r-in"><span class="co"># mmkin objects</span></span>
+<span class="r-in"><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">lapply</a></span><span class="op">(</span><span class="va">experimental_data_for_UBA_2019</span><span class="op">[</span><span class="fl">6</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span>,</span>
+<span class="r-in"> <span class="kw">function</span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="fu"><a href="https://rdrr.io/r/base/subset.html" class="external-link">subset</a></span><span class="op">(</span><span class="va">x</span><span class="op">$</span><span class="va">data</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"name"</span>, <span class="st">"time"</span>, <span class="st">"value"</span><span class="op">)</span><span class="op">]</span><span class="op">)</span><span class="op">)</span></span>
+<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste</a></span><span class="op">(</span><span class="st">"Dataset"</span>, <span class="fl">6</span><span class="op">:</span><span class="fl">10</span><span class="op">)</span></span>
+<span class="r-in"><span class="co"># \dontrun{</span></span>
+<span class="r-in"><span class="va">fits</span> <span class="op">&lt;-</span> <span class="fu"><a href="mmkin.html">mmkin</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"FOMC"</span>, <span class="st">"DFOP"</span><span class="op">)</span>, <span class="va">ds</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span>, cores <span class="op">=</span> <span class="fl">1</span><span class="op">)</span></span>
+<span class="r-in"><span class="fu">parms</span><span class="op">(</span><span class="va">fits</span><span class="op">[</span><span class="st">"SFO"</span>, <span class="op">]</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 88.52275400 82.666781678 86.8547308 91.7779306 82.14809450</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.05794659 0.009647805 0.2102974 0.1232258 0.00720421</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 5.15274487 7.040168584 3.6769645 6.4669234 6.50457673</span>
+<span class="r-in"><span class="fu">parms</span><span class="op">(</span><span class="va">fits</span><span class="op">[</span>, <span class="fl">2</span><span class="op">]</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $SFO</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 82.666781678</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.009647805</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 7.040168584</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $FOMC</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 92.6837649</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> alpha 0.4967832</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> beta 14.1451255</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 1.9167519</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $DFOP</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 91.058971589</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k1 0.044946770</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k2 0.002868336</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> g 0.526942415</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 2.221302196</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-in"><span class="fu">parms</span><span class="op">(</span><span class="va">fits</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $SFO</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 88.52275400 82.666781678 86.8547308 91.7779306 82.14809450</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.05794659 0.009647805 0.2102974 0.1232258 0.00720421</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 5.15274487 7.040168584 3.6769645 6.4669234 6.50457673</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $FOMC</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 95.558575 92.6837649 90.719787 98.383939 94.8481459</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> alpha 1.338667 0.4967832 1.639099 1.074460 0.2805272</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> beta 13.033315 14.1451255 5.007077 4.397126 6.9052224</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 1.847671 1.9167519 1.066063 3.146056 1.6222778</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $DFOP</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 96.55213663 91.058971589 90.34509493 98.14858820 94.311323734</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k1 0.21954588 0.044946770 0.41232288 0.31697588 0.080663857</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k2 0.02957934 0.002868336 0.07581766 0.03260384 0.003425417</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> g 0.44845068 0.526942415 0.66091967 0.65322767 0.342652880</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 1.35690468 2.221302196 1.34169076 2.87159846 1.942067831</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-in"><span class="fu">parms</span><span class="op">(</span><span class="va">fits</span>, transformed <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $SFO</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 88.522754 82.666782 86.854731 91.777931 82.148094</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> log_k_parent -2.848234 -4.641025 -1.559232 -2.093737 -4.933090</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 5.152745 7.040169 3.676964 6.466923 6.504577</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $FOMC</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 95.5585751 92.6837649 90.7197870 98.38393897 94.848146</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> log_alpha 0.2916741 -0.6996015 0.4941466 0.07181816 -1.271085</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> log_beta 2.5675088 2.6493701 1.6108523 1.48095106 1.932278</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 1.8476712 1.9167519 1.0660627 3.14605557 1.622278</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $DFOP</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dataset 6 Dataset 7 Dataset 8 Dataset 9 Dataset 10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 96.5521366 91.0589716 90.3450949 98.1485882 94.3113237</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> log_k1 -1.5161940 -3.1022764 -0.8859486 -1.1489296 -2.5174647</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> log_k2 -3.5206791 -5.8540232 -2.5794240 -3.4233253 -5.6765322</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> g_qlogis -0.2069326 0.1078741 0.6673953 0.6332573 -0.6514943</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 1.3569047 2.2213022 1.3416908 2.8715985 1.9420678</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-in"><span class="co"># }</span></span>
+</code></pre></div>
+ </div>
</div>
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