aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/saem.html
diff options
context:
space:
mode:
authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-10-30 17:09:21 +0100
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-10-30 17:09:21 +0100
commitb7901aac76df753ec1213cb02bebea055965ee87 (patch)
treee907e87d81aa07f19e8387acca612026337add75 /docs/reference/saem.html
parent193b46af027c7b30abf7cf215d77517370e5fb2c (diff)
Update static docs
Diffstat (limited to 'docs/reference/saem.html')
-rw-r--r--docs/reference/saem.html17
1 files changed, 11 insertions, 6 deletions
diff --git a/docs/reference/saem.html b/docs/reference/saem.html
index 9c367984..527718ef 100644
--- a/docs/reference/saem.html
+++ b/docs/reference/saem.html
@@ -19,7 +19,7 @@ Expectation Maximisation algorithm (SAEM)."><!-- mathjax --><script src="https:/
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.4</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.6</span>
</span>
</div>
@@ -56,6 +56,9 @@ Expectation Maximisation algorithm (SAEM)."><!-- mathjax --><script src="https:/
<a href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
+ <a href="../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a>
+ </li>
+ <li>
<a href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
@@ -365,6 +368,8 @@ using <a href="mmkin.html">mmkin</a>.</p>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_saem_fomc</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"convergence"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="saem-1.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_saem_fomc</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"individual.fit"</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Simulating data using nsim = 1000 simulated datasets</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Computing WRES and npde .</span>
<span class="r-plt img"><img src="saem-2.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_saem_fomc</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"npde"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Simulating data using nsim = 1000 simulated datasets</span>
@@ -439,10 +444,10 @@ using <a href="mmkin.html">mmkin</a>.</p>
<span class="r-plt img"><img src="saem-4.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_saem_dfop_sfo</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> saemix version used for fitting: 3.2 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> mkin version used for pre-fitting: 1.2.4 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> R version used for fitting: 4.3.0 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Date of fit: Fri May 19 09:17:55 2023 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Date of summary: Fri May 19 09:17:55 2023 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> mkin version used for pre-fitting: 1.2.6 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> R version used for fitting: 4.3.1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Date of fit: Mon Oct 30 09:34:35 2023 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Date of summary: Mon Oct 30 09:34:35 2023 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Equations:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *</span>
@@ -457,7 +462,7 @@ using <a href="mmkin.html">mmkin</a>.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Model predictions using solution type analytical </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Fitted in 4.02 s</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Fitted in 8.745 s</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Using 300, 100 iterations and 10 chains</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Variance model: Constant variance </span>

Contact - Imprint