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authorJohannes Ranke <jranke@uni-bremen.de>2022-11-17 14:54:20 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-11-17 14:56:25 +0100
commite5d1df9a9b1f0951d7dfbaf24eee4294470b73e2 (patch)
tree18740ef050a68d1a6fe91f1bd2fdfdd97ac6448b /docs/reference/summary.nlme.mmkin.html
parent90354f5cd9e095f9ef98424689a2716770b248d4 (diff)
Complete update of online docs for v1.2.0
Diffstat (limited to 'docs/reference/summary.nlme.mmkin.html')
-rw-r--r--docs/reference/summary.nlme.mmkin.html255
1 files changed, 145 insertions, 110 deletions
diff --git a/docs/reference/summary.nlme.mmkin.html b/docs/reference/summary.nlme.mmkin.html
index ff014cc1..eb01ef7a 100644
--- a/docs/reference/summary.nlme.mmkin.html
+++ b/docs/reference/summary.nlme.mmkin.html
@@ -21,7 +21,7 @@ endpoints such as formation fractions and DT50 values. Optionally
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.1.0</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.0</span>
</span>
</div>
@@ -48,19 +48,25 @@ endpoints such as formation fractions and DT50 values. Optionally
<a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
</li>
<li>
- <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../articles/web_only/multistart.html">Short demo of the multistart method</a>
</li>
<li>
<a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
+ <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ </li>
+ <li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
<li>
<a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
</li>
<li>
- <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+ <a href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
+ </li>
+ <li>
+ <a href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
</ul></li>
<li>
@@ -95,68 +101,95 @@ endpoints such as formation fractions and DT50 values. Optionally
</div>
<div id="ref-usage">
- <div class="sourceCode"><pre class="sourceCode r"><code><span class="co"># S3 method for nlme.mmkin</span>
-<span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span>
- <span class="va">object</span>,
- data <span class="op">=</span> <span class="cn">FALSE</span>,
- verbose <span class="op">=</span> <span class="cn">FALSE</span>,
- distimes <span class="op">=</span> <span class="cn">TRUE</span>,
- alpha <span class="op">=</span> <span class="fl">0.05</span>,
- <span class="va">...</span>
-<span class="op">)</span>
-
-<span class="co"># S3 method for summary.nlme.mmkin</span>
-<span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, digits <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Extremes.html" class="external-link">max</a></span><span class="op">(</span><span class="fl">3</span>, <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"digits"</span><span class="op">)</span> <span class="op">-</span> <span class="fl">3</span><span class="op">)</span>, verbose <span class="op">=</span> <span class="va">x</span><span class="op">$</span><span class="va">verbose</span>, <span class="va">...</span><span class="op">)</span></code></pre></div>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for nlme.mmkin</span></span>
+<span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span></span>
+<span> <span class="va">object</span>,</span>
+<span> data <span class="op">=</span> <span class="cn">FALSE</span>,</span>
+<span> verbose <span class="op">=</span> <span class="cn">FALSE</span>,</span>
+<span> distimes <span class="op">=</span> <span class="cn">TRUE</span>,</span>
+<span> alpha <span class="op">=</span> <span class="fl">0.05</span>,</span>
+<span> <span class="va">...</span></span>
+<span><span class="op">)</span></span>
+<span></span>
+<span><span class="co"># S3 method for summary.nlme.mmkin</span></span>
+<span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, digits <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Extremes.html" class="external-link">max</a></span><span class="op">(</span><span class="fl">3</span>, <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"digits"</span><span class="op">)</span> <span class="op">-</span> <span class="fl">3</span><span class="op">)</span>, verbose <span class="op">=</span> <span class="va">x</span><span class="op">$</span><span class="va">verbose</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>object</dt>
<dd><p>an object of class <a href="nlme.mmkin.html">nlme.mmkin</a></p></dd>
+
+
<dt>data</dt>
<dd><p>logical, indicating whether the full data should be included in
the summary.</p></dd>
+
+
<dt>verbose</dt>
<dd><p>Should the summary be verbose?</p></dd>
+
+
<dt>distimes</dt>
<dd><p>logical, indicating whether DT50 and DT90 values should be
included.</p></dd>
+
+
<dt>alpha</dt>
<dd><p>error level for confidence interval estimation from the t
distribution</p></dd>
+
+
<dt>...</dt>
<dd><p>optional arguments passed to methods like <code>print</code>.</p></dd>
+
+
<dt>x</dt>
<dd><p>an object of class summary.nlme.mmkin</p></dd>
+
+
<dt>digits</dt>
<dd><p>Number of digits to use for printing</p></dd>
+
</dl></div>
<div id="value">
<h2>Value</h2>
- <p>The summary function returns a list based on the <a href="https://rdrr.io/pkg/nlme/man/nlme.html" class="external-link">nlme</a> object
+
+
+<p>The summary function returns a list based on the <a href="https://rdrr.io/pkg/nlme/man/nlme.html" class="external-link">nlme</a> object
obtained in the fit, with at least the following additional components</p>
<dl><dt>nlmeversion, mkinversion, Rversion</dt>
<dd><p>The nlme, mkin and R versions used</p></dd>
+
<dt>date.fit, date.summary</dt>
<dd><p>The dates where the fit and the summary were
produced</p></dd>
+
<dt>diffs</dt>
<dd><p>The differential equations used in the degradation model</p></dd>
+
<dt>use_of_ff</dt>
<dd><p>Was maximum or minimum use made of formation fractions</p></dd>
+
<dt>data</dt>
<dd><p>The data</p></dd>
+
<dt>confint_trans</dt>
<dd><p>Transformed parameters as used in the optimisation, with confidence intervals</p></dd>
+
<dt>confint_back</dt>
<dd><p>Backtransformed parameters, with confidence intervals if available</p></dd>
+
<dt>ff</dt>
<dd><p>The estimated formation fractions derived from the fitted
model.</p></dd>
+
<dt>distimes</dt>
<dd><p>The DT50 and DT90 values for each observed variable.</p></dd>
+
<dt>SFORB</dt>
<dd><p>If applicable, eigenvalues of SFORB components of the model.</p></dd>
+
</dl><p>The print method is called for its side effect, i.e. printing the summary.</p>
</div>
<div id="author">
@@ -167,44 +200,46 @@ José Pinheiro and Douglas Bates for the components inherited from nlme</p>
<div id="ref-examples">
<h2>Examples</h2>
- <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"></span>
-<span class="r-in"><span class="co"># Generate five datasets following SFO kinetics</span></span>
-<span class="r-in"><span class="va">sampling_times</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">1</span>, <span class="fl">3</span>, <span class="fl">7</span>, <span class="fl">14</span>, <span class="fl">28</span>, <span class="fl">60</span>, <span class="fl">90</span>, <span class="fl">120</span><span class="op">)</span></span>
-<span class="r-in"><span class="va">dt50_sfo_in_pop</span> <span class="op">&lt;-</span> <span class="fl">50</span></span>
-<span class="r-in"><span class="va">k_in_pop</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log</a></span><span class="op">(</span><span class="fl">2</span><span class="op">)</span> <span class="op">/</span> <span class="va">dt50_sfo_in_pop</span></span>
-<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/Random.html" class="external-link">set.seed</a></span><span class="op">(</span><span class="fl">1234</span><span class="op">)</span></span>
-<span class="r-in"><span class="va">k_in</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/stats/Lognormal.html" class="external-link">rlnorm</a></span><span class="op">(</span><span class="fl">5</span>, <span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log</a></span><span class="op">(</span><span class="va">k_in_pop</span><span class="op">)</span>, <span class="fl">0.5</span><span class="op">)</span></span>
-<span class="r-in"><span class="va">SFO</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinmod.html">mkinmod</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span><span class="op">)</span><span class="op">)</span></span>
-<span class="r-in"></span>
-<span class="r-in"><span class="va">pred_sfo</span> <span class="op">&lt;-</span> <span class="kw">function</span><span class="op">(</span><span class="va">k</span><span class="op">)</span> <span class="op">{</span></span>
-<span class="r-in"> <span class="fu"><a href="mkinpredict.html">mkinpredict</a></span><span class="op">(</span><span class="va">SFO</span>,</span>
-<span class="r-in"> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>k_parent <span class="op">=</span> <span class="va">k</span><span class="op">)</span>,</span>
-<span class="r-in"> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="fl">100</span><span class="op">)</span>,</span>
-<span class="r-in"> <span class="va">sampling_times</span><span class="op">)</span></span>
-<span class="r-in"><span class="op">}</span></span>
-<span class="r-in"></span>
-<span class="r-in"><span class="va">ds_sfo_mean</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">lapply</a></span><span class="op">(</span><span class="va">k_in</span>, <span class="va">pred_sfo</span><span class="op">)</span></span>
-<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">ds_sfo_mean</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste</a></span><span class="op">(</span><span class="st">"ds"</span>, <span class="fl">1</span><span class="op">:</span><span class="fl">5</span><span class="op">)</span></span>
-<span class="r-in"></span>
-<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/Random.html" class="external-link">set.seed</a></span><span class="op">(</span><span class="fl">12345</span><span class="op">)</span></span>
-<span class="r-in"><span class="va">ds_sfo_syn</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">lapply</a></span><span class="op">(</span><span class="va">ds_sfo_mean</span>, <span class="kw">function</span><span class="op">(</span><span class="va">ds</span><span class="op">)</span> <span class="op">{</span></span>
-<span class="r-in"> <span class="fu"><a href="add_err.html">add_err</a></span><span class="op">(</span><span class="va">ds</span>,</span>
-<span class="r-in"> sdfunc <span class="op">=</span> <span class="kw">function</span><span class="op">(</span><span class="va">value</span><span class="op">)</span> <span class="fu"><a href="https://rdrr.io/r/base/MathFun.html" class="external-link">sqrt</a></span><span class="op">(</span><span class="fl">1</span><span class="op">^</span><span class="fl">2</span> <span class="op">+</span> <span class="va">value</span><span class="op">^</span><span class="fl">2</span> <span class="op">*</span> <span class="fl">0.07</span><span class="op">^</span><span class="fl">2</span><span class="op">)</span>,</span>
-<span class="r-in"> n <span class="op">=</span> <span class="fl">1</span><span class="op">)</span><span class="op">[[</span><span class="fl">1</span><span class="op">]</span><span class="op">]</span></span>
-<span class="r-in"><span class="op">}</span><span class="op">)</span></span>
-<span class="r-in"></span>
-<span class="r-in"><span class="co"># \dontrun{</span></span>
-<span class="r-in"><span class="co"># Evaluate using mmkin and nlme</span></span>
-<span class="r-in"><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://svn.r-project.org/R-packages/trunk/nlme/" class="external-link">nlme</a></span><span class="op">)</span></span>
-<span class="r-in"><span class="va">f_mmkin</span> <span class="op">&lt;-</span> <span class="fu"><a href="mmkin.html">mmkin</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="va">ds_sfo_syn</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span>, error_model <span class="op">=</span> <span class="st">"tc"</span>, cores <span class="op">=</span> <span class="fl">1</span><span class="op">)</span></span>
-<span class="r-in"><span class="va">f_nlme</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/pkg/nlme/man/nlme.html" class="external-link">nlme</a></span><span class="op">(</span><span class="va">f_mmkin</span><span class="op">)</span></span>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="co"># Generate five datasets following SFO kinetics</span></span></span>
+<span class="r-in"><span><span class="va">sampling_times</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">1</span>, <span class="fl">3</span>, <span class="fl">7</span>, <span class="fl">14</span>, <span class="fl">28</span>, <span class="fl">60</span>, <span class="fl">90</span>, <span class="fl">120</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">dt50_sfo_in_pop</span> <span class="op">&lt;-</span> <span class="fl">50</span></span></span>
+<span class="r-in"><span><span class="va">k_in_pop</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log</a></span><span class="op">(</span><span class="fl">2</span><span class="op">)</span> <span class="op">/</span> <span class="va">dt50_sfo_in_pop</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/Random.html" class="external-link">set.seed</a></span><span class="op">(</span><span class="fl">1234</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">k_in</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/stats/Lognormal.html" class="external-link">rlnorm</a></span><span class="op">(</span><span class="fl">5</span>, <span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log</a></span><span class="op">(</span><span class="va">k_in_pop</span><span class="op">)</span>, <span class="fl">0.5</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">SFO</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinmod.html">mkinmod</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="va">pred_sfo</span> <span class="op">&lt;-</span> <span class="kw">function</span><span class="op">(</span><span class="va">k</span><span class="op">)</span> <span class="op">{</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="mkinpredict.html">mkinpredict</a></span><span class="op">(</span><span class="va">SFO</span>,</span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>k_parent <span class="op">=</span> <span class="va">k</span><span class="op">)</span>,</span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="fl">100</span><span class="op">)</span>,</span></span>
+<span class="r-in"><span> <span class="va">sampling_times</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="op">}</span></span></span>
+<span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="va">ds_sfo_mean</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">lapply</a></span><span class="op">(</span><span class="va">k_in</span>, <span class="va">pred_sfo</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">ds_sfo_mean</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste</a></span><span class="op">(</span><span class="st">"ds"</span>, <span class="fl">1</span><span class="op">:</span><span class="fl">5</span><span class="op">)</span></span></span>
+<span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/Random.html" class="external-link">set.seed</a></span><span class="op">(</span><span class="fl">12345</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">ds_sfo_syn</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">lapply</a></span><span class="op">(</span><span class="va">ds_sfo_mean</span>, <span class="kw">function</span><span class="op">(</span><span class="va">ds</span><span class="op">)</span> <span class="op">{</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="add_err.html">add_err</a></span><span class="op">(</span><span class="va">ds</span>,</span></span>
+<span class="r-in"><span> sdfunc <span class="op">=</span> <span class="kw">function</span><span class="op">(</span><span class="va">value</span><span class="op">)</span> <span class="fu"><a href="https://rdrr.io/r/base/MathFun.html" class="external-link">sqrt</a></span><span class="op">(</span><span class="fl">1</span><span class="op">^</span><span class="fl">2</span> <span class="op">+</span> <span class="va">value</span><span class="op">^</span><span class="fl">2</span> <span class="op">*</span> <span class="fl">0.07</span><span class="op">^</span><span class="fl">2</span><span class="op">)</span>,</span></span>
+<span class="r-in"><span> n <span class="op">=</span> <span class="fl">1</span><span class="op">)</span><span class="op">[[</span><span class="fl">1</span><span class="op">]</span><span class="op">]</span></span></span>
+<span class="r-in"><span><span class="op">}</span><span class="op">)</span></span></span>
+<span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="co"># \dontrun{</span></span></span>
+<span class="r-in"><span><span class="co"># Evaluate using mmkin and nlme</span></span></span>
+<span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://svn.r-project.org/R-packages/trunk/nlme/" class="external-link">nlme</a></span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">f_mmkin</span> <span class="op">&lt;-</span> <span class="fu"><a href="mmkin.html">mmkin</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="va">ds_sfo_syn</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span>, error_model <span class="op">=</span> <span class="st">"tc"</span>, cores <span class="op">=</span> <span class="fl">1</span><span class="op">)</span></span></span>
+<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Optimisation did not converge:</span>
+<span class="r-wrn co"><span class="r-pr">#&gt;</span> iteration limit reached without convergence (10)</span>
+<span class="r-in"><span><span class="va">f_nlme</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/pkg/nlme/man/nlme.html" class="external-link">nlme</a></span><span class="op">(</span><span class="va">f_mmkin</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Iteration 4, LME step: nlminb() did not converge (code = 1). PORT message: false convergence (8)</span>
-<span class="r-in"><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_nlme</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> nlme version used for fitting: 3.1.155 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> mkin version used for pre-fitting: 1.1.0 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> R version used for fitting: 4.2.1 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Date of fit: Thu Jun 30 10:23:57 2022 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Date of summary: Thu Jun 30 10:23:57 2022 </span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_nlme</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> nlme version used for fitting: 3.1.160 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> mkin version used for pre-fitting: 1.2.0 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> R version used for fitting: 4.2.2 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Date of fit: Thu Nov 17 14:03:27 2022 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Date of summary: Thu Nov 17 14:03:27 2022 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Equations:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> d_parent/dt = - k_parent * parent</span>
@@ -220,7 +255,7 @@ José Pinheiro and Douglas Bates for the components inherited from nlme</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Mean of starting values for individual parameters:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 log_k_parent </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 101.612 -4.454 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 101.569 -4.454 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Fixed degradation parameter values:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> None</span>
@@ -244,18 +279,18 @@ José Pinheiro and Douglas Bates for the components inherited from nlme</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> Level: ds</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Structure: Diagonal</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 log_k_parent Residual</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> StdDev: 6.904e-05 0.5863 1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> StdDev: 6.924e-05 0.5863 1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Variance function:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Structure: Constant plus proportion of variance covariate</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Formula: ~fitted(.) </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Parameter estimates:</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> const prop </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 0.000121099 0.078996777 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> const prop </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0.0001208853 0.0789968036 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Backtransformed parameters with asymmetric confidence intervals:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> lower est. upper</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 99.370886 101.59243 103.81398</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 99.370882 101.59243 103.81398</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.006923 0.01168 0.01972</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Estimated disappearance times:</span>
@@ -266,48 +301,48 @@ José Pinheiro and Douglas Bates for the components inherited from nlme</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds name time observed predicted residual std standardized</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 0 104.1 101.592 2.50757 8.0255 0.312451</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 0 105.0 101.592 3.40757 8.0255 0.424594</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 1 98.5 100.796 -2.29571 7.9625 -0.288314</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 1 98.5 100.796 -2.29571 7.9625 -0.288313</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 1 96.1 100.796 -4.69571 7.9625 -0.589725</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 3 101.9 99.221 2.67904 7.8381 0.341796</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 3 85.2 99.221 -14.02096 7.8381 -1.788813</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 7 99.1 96.145 2.95512 7.5951 0.389080</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 3 85.2 99.221 -14.02096 7.8381 -1.788812</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 7 99.1 96.145 2.95512 7.5951 0.389081</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 7 93.0 96.145 -3.14488 7.5951 -0.414065</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 14 88.1 90.989 -2.88944 7.1879 -0.401988</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 14 84.1 90.989 -6.88944 7.1879 -0.958481</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 14 88.1 90.989 -2.88944 7.1879 -0.401987</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 14 84.1 90.989 -6.88944 7.1879 -0.958480</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 28 80.2 81.493 -1.29305 6.4377 -0.200857</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 28 91.3 81.493 9.80695 6.4377 1.523364</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 60 65.1 63.344 1.75642 5.0039 0.351008</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 60 65.8 63.344 2.45642 5.0039 0.490898</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 90 47.8 50.018 -2.21764 3.9512 -0.561253</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 90 47.8 50.018 -2.21764 3.9512 -0.561252</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 90 53.5 50.018 3.48236 3.9512 0.881335</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 120 37.6 39.495 -1.89515 3.1200 -0.607423</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 1 parent 120 39.3 39.495 -0.19515 3.1200 -0.062549</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 0 107.9 101.592 6.30757 8.0255 0.785943</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 0 102.1 101.592 0.50757 8.0255 0.063244</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 0 102.1 101.592 0.50757 8.0255 0.063245</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 1 103.8 100.058 3.74159 7.9043 0.473361</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 1 108.6 100.058 8.54159 7.9043 1.080626</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 3 91.0 97.060 -6.05952 7.6674 -0.790297</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 3 84.9 97.060 -12.15952 7.6674 -1.585875</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 7 79.3 91.329 -12.02867 7.2147 -1.667252</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 3 84.9 97.060 -12.15952 7.6674 -1.585874</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 7 79.3 91.329 -12.02867 7.2147 -1.667251</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 7 100.9 91.329 9.57133 7.2147 1.326647</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 14 77.3 82.102 -4.80185 6.4858 -0.740366</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 14 83.5 82.102 1.39815 6.4858 0.215571</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 28 66.8 66.351 0.44945 5.2415 0.085748</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 28 63.3 66.351 -3.05055 5.2415 -0.582002</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 60 40.8 40.775 0.02474 3.2211 0.007681</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 60 44.8 40.775 4.02474 3.2211 1.249487</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 90 27.8 25.832 1.96762 2.0407 0.964200</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 90 27.0 25.832 1.16762 2.0407 0.572173</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 120 15.2 16.366 -1.16561 1.2928 -0.901593</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 120 15.5 16.366 -0.86561 1.2928 -0.669544</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 0 97.7 101.592 -3.89243 8.0255 -0.485010</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 0 88.2 101.592 -13.39243 8.0255 -1.668740</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 1 109.9 99.218 10.68195 7.8379 1.362858</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 1 97.8 99.218 -1.41805 7.8379 -0.180921</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 60 40.8 40.775 0.02474 3.2211 0.007679</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 60 44.8 40.775 4.02474 3.2211 1.249485</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 90 27.8 25.832 1.96762 2.0407 0.964198</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 90 27.0 25.832 1.16762 2.0407 0.572171</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 120 15.2 16.366 -1.16561 1.2928 -0.901595</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 2 parent 120 15.5 16.366 -0.86561 1.2928 -0.669547</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 0 97.7 101.592 -3.89243 8.0255 -0.485009</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 0 88.2 101.592 -13.39243 8.0255 -1.668739</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 1 109.9 99.218 10.68196 7.8379 1.362858</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 1 97.8 99.218 -1.41804 7.8379 -0.180921</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 3 100.5 94.634 5.86555 7.4758 0.784603</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 3 77.4 94.634 -17.23445 7.4758 -2.305361</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 7 78.3 86.093 -7.79273 6.8010 -1.145814</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 7 90.3 86.093 4.20727 6.8010 0.618620</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 3 77.4 94.634 -17.23445 7.4758 -2.305360</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 7 78.3 86.093 -7.79273 6.8011 -1.145813</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 7 90.3 86.093 4.20727 6.8011 0.618620</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 14 76.0 72.958 3.04222 5.7634 0.527848</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 14 79.1 72.958 6.14222 5.7634 1.065722</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 28 46.0 52.394 -6.39404 4.1390 -1.544842</span>
@@ -315,47 +350,47 @@ José Pinheiro and Douglas Bates for the components inherited from nlme</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 60 25.1 24.582 0.51786 1.9419 0.266676</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 60 21.4 24.582 -3.18214 1.9419 -1.638664</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 90 11.0 12.092 -1.09202 0.9552 -1.143199</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 90 14.2 12.092 2.10798 0.9552 2.206778</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 90 14.2 12.092 2.10798 0.9552 2.206776</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 120 5.8 5.948 -0.14810 0.4699 -0.315178</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 120 6.1 5.948 0.15190 0.4699 0.323283</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 3 parent 120 6.1 5.948 0.15190 0.4699 0.323282</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 0 95.3 101.592 -6.29243 8.0255 -0.784057</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 0 102.0 101.592 0.40757 8.0255 0.050784</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 1 104.4 101.125 3.27549 7.9885 0.410025</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 1 105.4 101.125 4.27549 7.9885 0.535204</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 1 105.4 101.125 4.27549 7.9885 0.535205</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 3 113.7 100.195 13.50487 7.9151 1.706218</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 3 82.3 100.195 -17.89513 7.9151 -2.260887</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 7 98.1 98.362 -0.26191 7.7703 -0.033706</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 7 87.8 98.362 -10.56191 7.7703 -1.359271</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 14 97.9 95.234 2.66589 7.5232 0.354356</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 14 104.8 95.234 9.56589 7.5232 1.271521</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 28 85.0 89.274 -4.27373 7.0523 -0.606002</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 28 77.2 89.274 -12.07373 7.0523 -1.712019</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 60 82.2 77.013 5.18659 6.0838 0.852523</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 60 86.1 77.013 9.08659 6.0838 1.493568</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 90 70.5 67.053 3.44690 5.2970 0.650729</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 90 61.7 67.053 -5.35310 5.2970 -1.010595</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 120 60.0 58.381 1.61902 4.6119 0.351052</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 120 56.4 58.381 -1.98098 4.6119 -0.429535</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 0 92.6 101.592 -8.99243 8.0255 -1.120486</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 3 82.3 100.195 -17.89513 7.9151 -2.260886</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 7 98.1 98.362 -0.26190 7.7703 -0.033706</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 7 87.8 98.362 -10.56190 7.7703 -1.359270</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 14 97.9 95.234 2.66590 7.5232 0.354357</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 14 104.8 95.234 9.56590 7.5232 1.271521</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 28 85.0 89.274 -4.27372 7.0523 -0.606001</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 28 77.2 89.274 -12.07372 7.0523 -1.712017</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 60 82.2 77.013 5.18661 6.0838 0.852526</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 60 86.1 77.013 9.08661 6.0838 1.493571</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 90 70.5 67.053 3.44692 5.2970 0.650733</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 90 61.7 67.053 -5.35308 5.2970 -1.010591</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 120 60.0 58.381 1.61905 4.6119 0.351058</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 4 parent 120 56.4 58.381 -1.98095 4.6119 -0.429530</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 0 92.6 101.592 -8.99243 8.0255 -1.120485</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 0 116.5 101.592 14.90757 8.0255 1.857531</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 1 108.0 99.914 8.08560 7.8929 1.024412</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 1 108.0 99.914 8.08560 7.8929 1.024413</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 1 104.9 99.914 4.98560 7.8929 0.631655</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 3 100.5 96.641 3.85898 7.6343 0.505477</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 3 89.5 96.641 -7.14102 7.6343 -0.935383</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 3 89.5 96.641 -7.14102 7.6343 -0.935382</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 7 91.7 90.412 1.28752 7.1423 0.180267</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 7 95.1 90.412 4.68752 7.1423 0.656304</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 14 82.2 80.463 1.73715 6.3563 0.273296</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 14 82.2 80.463 1.73715 6.3563 0.273295</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 14 84.5 80.463 4.03715 6.3563 0.635141</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 28 60.5 63.728 -3.22788 5.0343 -0.641178</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 28 72.8 63.728 9.07212 5.0343 1.802063</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 60 38.3 37.399 0.90062 2.9544 0.304836</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 60 40.7 37.399 3.30062 2.9544 1.117176</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 90 22.5 22.692 -0.19164 1.7926 -0.106910</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 90 20.8 22.692 -1.89164 1.7926 -1.055271</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 120 13.4 13.768 -0.36789 1.0876 -0.338255</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 120 13.8 13.768 0.03211 1.0876 0.029520</span>
-<span class="r-in"><span class="co"># }</span></span>
-<span class="r-in"></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 28 72.8 63.728 9.07212 5.0343 1.802062</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 60 38.3 37.399 0.90061 2.9544 0.304835</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 60 40.7 37.399 3.30061 2.9544 1.117174</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 90 22.5 22.692 -0.19165 1.7926 -0.106913</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 90 20.8 22.692 -1.89165 1.7926 -1.055273</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 120 13.4 13.768 -0.36790 1.0876 -0.338259</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> ds 5 parent 120 13.8 13.768 0.03210 1.0876 0.029517</span>
+<span class="r-in"><span><span class="co"># }</span></span></span>
+<span class="r-in"><span></span></span>
</code></pre></div>
</div>
</div>
@@ -370,7 +405,7 @@ José Pinheiro and Douglas Bates for the components inherited from nlme</p>
</div>
<div class="pkgdown">
- <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.3.</p>
+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
</div>
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