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authorJohannes Ranke <jranke@uni-bremen.de>2019-05-03 19:14:15 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2019-05-03 19:14:15 +0200
commit1ef7008be2a72a0847064ad9c2ddcfa16b055482 (patch)
treeecc3f90e5d18c75aea14ad774aad9214039c0674 /docs/reference/test_data_from_UBA_2014.html
parentde7b6acdd75a0f95f2a9522c22625810f4aa329a (diff)
Improve error model fitting
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
Diffstat (limited to 'docs/reference/test_data_from_UBA_2014.html')
-rw-r--r--docs/reference/test_data_from_UBA_2014.html34
1 files changed, 17 insertions, 17 deletions
diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html
index 688baf32..bc988340 100644
--- a/docs/reference/test_data_from_UBA_2014.html
+++ b/docs/reference/test_data_from_UBA_2014.html
@@ -160,14 +160,14 @@
<span class='no'>m_ws</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent_w</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"parent_s"</span>),
<span class='kw'>parent_s</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"parent_w"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> <span class='no'>f_river</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_ws</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>1</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_river</span>)</div><div class='img'><img src='test_data_from_UBA_2014-1.png' alt='' width='700' height='433' /></div><div class='input'>
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f_river</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t)
-#&gt; parent_w_0 9.598567e+01 2.12352039 4.520120e+01 9.476357e-18
-#&gt; k_parent_w_sink 3.603743e-01 0.03149366 1.144276e+01 4.128096e-09
-#&gt; k_parent_w_parent_s 6.031371e-02 0.01603582 3.761185e+00 9.436293e-04
-#&gt; k_parent_s_sink 7.560341e-11 0.09483761 7.971881e-10 5.000000e-01
-#&gt; k_parent_s_parent_w 7.419672e-02 0.10738374 6.909493e-01 2.500756e-01
-#&gt; sigma 2.982879e+00 0.50546582 5.901247e+00 1.454824e-05
+#&gt; parent_w_0 9.598567e+01 2.12351789 4.520126e+01 9.476190e-18
+#&gt; k_parent_w_sink 3.603743e-01 0.03149282 1.144306e+01 4.126593e-09
+#&gt; k_parent_w_parent_s 6.031371e-02 0.01603582 3.761186e+00 9.436275e-04
+#&gt; k_parent_s_sink 5.108964e-11 0.09482736 5.387647e-10 5.000000e-01
+#&gt; k_parent_s_parent_w 7.419672e-02 0.10737376 6.910135e-01 2.500560e-01
+#&gt; sigma 2.982879e+00 0.50545649 5.901356e+00 1.454535e-05
#&gt; Lower Upper
-#&gt; parent_w_0 91.48420501 100.4871438
+#&gt; parent_w_0 91.48420503 100.4871438
#&gt; k_parent_w_sink 0.30668904 0.4234571
#&gt; k_parent_w_parent_s 0.03423904 0.1062455
#&gt; k_parent_s_sink 0.00000000 Inf
@@ -184,25 +184,25 @@
<span class='kw'>M3</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>),
<span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
<span class='no'>f_soil</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_soil</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>3</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_soil</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"bottomright"</span>))</div><div class='img'><img src='test_data_from_UBA_2014-2.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f_soil</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
-#&gt; parent_0 76.55425583 0.859186612 89.1008482 1.113866e-26 74.755959748
-#&gt; k_parent 0.12081956 0.004601921 26.2541551 1.077372e-16 0.111561582
-#&gt; k_M1 0.84258650 0.806231456 1.0450926 1.545475e-01 0.113839804
-#&gt; k_M2 0.04210878 0.017083049 2.4649452 1.170195e-02 0.018013807
+#&gt; parent_0 76.55425584 0.859186619 89.1008474 1.113866e-26 74.755959756
+#&gt; k_parent 0.12081956 0.004601922 26.2541544 1.077373e-16 0.111561582
+#&gt; k_M1 0.84258649 0.806231419 1.0450926 1.545475e-01 0.113839803
+#&gt; k_M2 0.04210878 0.017083049 2.4649453 1.170195e-02 0.018013807
#&gt; k_M3 0.01122919 0.007245890 1.5497322 6.885127e-02 0.002909463
-#&gt; f_parent_to_M1 0.32240199 0.240803564 1.3388589 9.820820e-02 NA
-#&gt; f_parent_to_M2 0.16099854 0.033691991 4.7785403 6.531225e-05 NA
-#&gt; f_M1_to_M3 0.27921500 0.269443517 1.0362654 1.565440e-01 0.022992933
-#&gt; f_M2_to_M3 0.55641333 0.595125466 0.9349513 1.807725e-01 0.008003317
+#&gt; f_parent_to_M1 0.32240199 0.240803555 1.3388589 9.820820e-02 NA
+#&gt; f_parent_to_M2 0.16099854 0.033691991 4.7785403 6.531224e-05 NA
+#&gt; f_M1_to_M3 0.27921501 0.269443514 1.0362655 1.565440e-01 0.022992937
+#&gt; f_M2_to_M3 0.55641331 0.595125445 0.9349513 1.807725e-01 0.008003317
#&gt; sigma 1.14005399 0.149696423 7.6157731 1.727024e-07 0.826735778
#&gt; Upper
#&gt; parent_0 78.35255192
#&gt; k_parent 0.13084582
-#&gt; k_M1 6.23641283
+#&gt; k_M1 6.23641265
#&gt; k_M2 0.09843279
#&gt; k_M3 0.04333950
#&gt; f_parent_to_M1 NA
#&gt; f_parent_to_M2 NA
-#&gt; f_M1_to_M3 0.86443084
+#&gt; f_M1_to_M3 0.86443083
#&gt; f_M2_to_M3 0.99489847
#&gt; sigma 1.45337221</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span>(<span class='no'>f_soil</span>)</div><div class='output co'>#&gt; err.min n.optim df
#&gt; All data 0.09649963 9 20

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