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authorJohannes Ranke <jranke@uni-bremen.de>2017-07-29 15:15:41 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2017-07-29 15:15:41 +0200
commit20d7834a633d32b663c6bcc1a7f7b0300aa65d5b (patch)
tree77338f14ecaf26a4059ada9933ffde1fb5c19072 /docs/reference/transform_odeparms.html
parent5447af959b2a9b0dc52695bf6a309f346ced085a (diff)
Bump version, update NEWS and rebuild pkdown docsv0.9.46
Diffstat (limited to 'docs/reference/transform_odeparms.html')
-rw-r--r--docs/reference/transform_odeparms.html40
1 files changed, 20 insertions, 20 deletions
diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html
index c14740c2..bbf15a41 100644
--- a/docs/reference/transform_odeparms.html
+++ b/docs/reference/transform_odeparms.html
@@ -170,10 +170,10 @@
<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"m1"</span>, <span class='kw'>sink</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>),
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='co'># Fit the model to the FOCUS example dataset D using defaults</span>
<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='fu'>summary</span>(<span class='no'>fit</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>) <span class='co'># See transformed and backtransformed parameters</span></div><div class='output co'>#&gt; mkin version: 0.9.45.2
-#&gt; R version: 3.4.0
-#&gt; Date of fit: Fri May 5 12:46:24 2017
-#&gt; Date of summary: Fri May 5 12:46:24 2017
+<span class='fu'>summary</span>(<span class='no'>fit</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>) <span class='co'># See transformed and backtransformed parameters</span></div><div class='output co'>#&gt; mkin version: 0.9.46
+#&gt; R version: 3.4.1
+#&gt; Date of fit: Sat Jul 29 15:15:35 2017
+#&gt; Date of summary: Sat Jul 29 15:15:35 2017
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -181,7 +181,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 153 model solutions performed in 0.61 s
+#&gt; Fitted with method Port using 153 model solutions performed in 0.608 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -247,10 +247,10 @@
#&gt; m1 131.761 437.70</div><div class='input'>
<span class='no'>fit.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>transform_rates</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='fu'>summary</span>(<span class='no'>fit.2</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version: 0.9.45.2
-#&gt; R version: 3.4.0
-#&gt; Date of fit: Fri May 5 12:46:26 2017
-#&gt; Date of summary: Fri May 5 12:46:26 2017
+<span class='fu'>summary</span>(<span class='no'>fit.2</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version: 0.9.46
+#&gt; R version: 3.4.1
+#&gt; Date of fit: Sat Jul 29 15:15:36 2017
+#&gt; Date of summary: Sat Jul 29 15:15:36 2017
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -258,7 +258,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 352 model solutions performed in 1.437 s
+#&gt; Fitted with method Port using 352 model solutions performed in 1.401 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -337,10 +337,10 @@
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>),
<span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
<span class='no'>fit.ff</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='fu'>summary</span>(<span class='no'>fit.ff</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version: 0.9.45.2
-#&gt; R version: 3.4.0
-#&gt; Date of fit: Fri May 5 12:46:27 2017
-#&gt; Date of summary: Fri May 5 12:46:27 2017
+<span class='fu'>summary</span>(<span class='no'>fit.ff</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version: 0.9.46
+#&gt; R version: 3.4.1
+#&gt; Date of fit: Sat Jul 29 15:15:37 2017
+#&gt; Date of summary: Sat Jul 29 15:15:37 2017
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -348,7 +348,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 185 model solutions performed in 0.776 s
+#&gt; Fitted with method Port using 185 model solutions performed in 0.772 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -421,10 +421,10 @@
<span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
<span class='no'>fit.ff.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO.ff.2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='fu'>summary</span>(<span class='no'>fit.ff.2</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version: 0.9.45.2
-#&gt; R version: 3.4.0
-#&gt; Date of fit: Fri May 5 12:46:28 2017
-#&gt; Date of summary: Fri May 5 12:46:28 2017
+<span class='fu'>summary</span>(<span class='no'>fit.ff.2</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version: 0.9.46
+#&gt; R version: 3.4.1
+#&gt; Date of fit: Sat Jul 29 15:15:38 2017
+#&gt; Date of summary: Sat Jul 29 15:15:38 2017
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -432,7 +432,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 104 model solutions performed in 0.433 s
+#&gt; Fitted with method Port using 104 model solutions performed in 0.416 s
#&gt;
#&gt; Weighting: none
#&gt;

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