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authorJohannes Ranke <jranke@uni-bremen.de>2020-04-02 10:58:34 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-04-03 10:53:07 +0200
commit47ba9ea512b82fb8b31da8ec5558f3c0952d86d4 (patch)
tree775b56488b5f040132d00a962c6f7f876ed15b7c /docs/reference
parent1d01aa6e40bdb3e338638b9239153cf82713d634 (diff)
Compiled models article, reduce distractions
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
Diffstat (limited to 'docs/reference')
-rw-r--r--docs/reference/endpoints.html5
-rw-r--r--docs/reference/plot.mmkin.html7
2 files changed, 8 insertions, 4 deletions
diff --git a/docs/reference/endpoints.html b/docs/reference/endpoints.html
index e81bdbb5..f201294d 100644
--- a/docs/reference/endpoints.html
+++ b/docs/reference/endpoints.html
@@ -75,7 +75,7 @@ advantage that the SFORB model can also be used for metabolites." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.6</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.9</span>
</span>
</div>
@@ -171,9 +171,6 @@ advantage that the SFORB model can also be used for metabolites.</p>
<span class='fu'>endpoints</span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; $ff
#&gt; logical(0)
#&gt;
-#&gt; $SFORB
-#&gt; logical(0)
-#&gt;
#&gt; $distimes
#&gt; DT50 DT90 DT50back
#&gt; parent 1.785233 15.1479 4.559973
diff --git a/docs/reference/plot.mmkin.html b/docs/reference/plot.mmkin.html
index 9d41b4c1..be60f228 100644
--- a/docs/reference/plot.mmkin.html
+++ b/docs/reference/plot.mmkin.html
@@ -149,6 +149,7 @@ the fit of at least one model to the same dataset is shown.</p>
<span class='kw'>main</span> <span class='kw'>=</span> <span class='st'>"auto"</span>,
<span class='kw'>legends</span> <span class='kw'>=</span> <span class='fl'>1</span>,
<span class='kw'>resplot</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"time"</span>, <span class='st'>"errmod"</span>),
+ <span class='kw'>standardized</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
<span class='kw'>show_errmin</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
<span class='kw'>errmin_var</span> <span class='kw'>=</span> <span class='st'>"All data"</span>,
<span class='kw'>errmin_digits</span> <span class='kw'>=</span> <span class='fl'>3</span>,
@@ -181,6 +182,12 @@ column.</p></td>
values, with the error model, using <code><a href='mkinerrplot.html'>mkinerrplot</a></code>.</p></td>
</tr>
<tr>
+ <th>standardized</th>
+ <td><p>Should the residuals be standardized? This option
+is passed to <code><a href='mkinresplot.html'>mkinresplot</a></code>, it only takes effect if
+`resplot = "time"`.</p></td>
+ </tr>
+ <tr>
<th>show_errmin</th>
<td><p>Should the chi2 error level be shown on top of the plots
to the left?</p></td>

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