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authorJohannes Ranke <jranke@uni-bremen.de>2019-02-26 21:12:21 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2019-02-26 21:12:21 +0100
commit10f2314d12bc1e1664b1ff1db015d1df9f7fbe34 (patch)
treed6d9cca6d8a394ccd4ff73a809cbd74806ec873f /docs
parent396e40d2c45d81a8e74c41a2f632665021e980a1 (diff)
Static documentation rebuilt by pkgdown
Diffstat (limited to 'docs')
-rw-r--r--docs/articles/FOCUS_D.html9
-rw-r--r--docs/articles/FOCUS_L.html39
-rw-r--r--docs/articles/index.html3
-rw-r--r--docs/articles/mkin.html3
-rw-r--r--docs/articles/twa.html3
-rw-r--r--docs/articles/web_only/FOCUS_Z.html3
-rw-r--r--docs/articles/web_only/NAFTA_examples.html3
-rw-r--r--docs/articles/web_only/compiled_models.html13
-rw-r--r--docs/news/index.html3
-rw-r--r--docs/reference/AIC.mmkin.html3
-rw-r--r--docs/reference/CAKE_export.html3
-rw-r--r--docs/reference/DFOP.solution.html3
-rw-r--r--docs/reference/Extract.mmkin.html13
-rw-r--r--docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html3
-rw-r--r--docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html3
-rw-r--r--docs/reference/FOCUS_2006_HS_ref_A_to_F.html3
-rw-r--r--docs/reference/FOCUS_2006_SFO_ref_A_to_F.html3
-rw-r--r--docs/reference/FOCUS_2006_datasets.html3
-rw-r--r--docs/reference/FOMC.solution.html3
-rw-r--r--docs/reference/HS.solution.html3
-rw-r--r--docs/reference/IORE.solution.html3
-rw-r--r--docs/reference/NAFTA_SOP_2015.html3
-rw-r--r--docs/reference/NAFTA_SOP_Attachment.html5
-rw-r--r--docs/reference/SFO.solution.html3
-rw-r--r--docs/reference/SFORB.solution.html3
-rw-r--r--docs/reference/add_err.html3
-rw-r--r--docs/reference/endpoints.html3
-rw-r--r--docs/reference/geometric_mean.html3
-rw-r--r--docs/reference/ilr.html3
-rw-r--r--docs/reference/index.html9
-rw-r--r--docs/reference/logLik.mkinfit.html3
-rw-r--r--docs/reference/logistic.solution.html3
-rw-r--r--docs/reference/max_twa_parent.html3
-rw-r--r--docs/reference/mccall81_245T.html15
-rw-r--r--docs/reference/mkin_long_to_wide.html3
-rw-r--r--docs/reference/mkin_wide_to_long.html3
-rw-r--r--docs/reference/mkinds.html3
-rw-r--r--docs/reference/mkinerrmin.html3
-rw-r--r--docs/reference/mkinfit.html47
-rw-r--r--docs/reference/mkinmod.html5
-rw-r--r--docs/reference/mkinparplot.html3
-rw-r--r--docs/reference/mkinplot.html3
-rw-r--r--docs/reference/mkinpredict.html7
-rw-r--r--docs/reference/mkinresplot.html3
-rw-r--r--docs/reference/mkinsub.html3
-rw-r--r--docs/reference/mmkin.html7
-rw-r--r--docs/reference/nafta.html3
-rw-r--r--docs/reference/plot.mkinfit.html3
-rw-r--r--docs/reference/plot.mmkin.html3
-rw-r--r--docs/reference/plot.nafta.html3
-rw-r--r--docs/reference/print.mkinds.html3
-rw-r--r--docs/reference/print.mkinmod.html3
-rw-r--r--docs/reference/print.nafta.html3
-rw-r--r--docs/reference/schaefer07_complex_case.html3
-rw-r--r--docs/reference/sigma_twocomp.html3
-rw-r--r--docs/reference/summary.mkinfit.html7
-rw-r--r--docs/reference/synthetic_data_for_UBA.html3
-rw-r--r--docs/reference/test_data_from_UBA_2014.html3
-rw-r--r--docs/reference/transform_odeparms.html27
59 files changed, 262 insertions, 79 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index 9030710e..e01fd46d 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -64,6 +64,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -163,8 +166,8 @@
<div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Tue Feb 26 20:25:04 2019
-## Date of summary: Tue Feb 26 20:25:04 2019
+## Date of fit: Tue Feb 26 21:09:15 2019
+## Date of summary: Tue Feb 26 21:09:15 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -172,7 +175,7 @@
##
## Model predictions using solution type deSolve
##
-## Fitted with method Port using 153 model solutions performed in 0.7 s
+## Fitted with method Port using 153 model solutions performed in 0.712 s
##
## Weighting: none
##
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index a6853c97..aeded526 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -64,6 +64,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -111,15 +114,15 @@
<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Tue Feb 26 20:25:06 2019
-## Date of summary: Tue Feb 26 20:25:06 2019
+## Date of fit: Tue Feb 26 21:09:17 2019
+## Date of summary: Tue Feb 26 21:09:17 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 37 model solutions performed in 0.095 s
+## Fitted with method Port using 37 model solutions performed in 0.096 s
##
## Weighting: none
##
@@ -202,15 +205,15 @@
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Tue Feb 26 20:25:08 2019
-## Date of summary: Tue Feb 26 20:25:08 2019
+## Date of fit: Tue Feb 26 21:09:19 2019
+## Date of summary: Tue Feb 26 21:09:19 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.509 s
+## Fitted with method Port using 611 model solutions performed in 1.539 s
##
## Weighting: none
##
@@ -297,15 +300,15 @@
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Tue Feb 26 20:25:08 2019
-## Date of summary: Tue Feb 26 20:25:08 2019
+## Date of fit: Tue Feb 26 21:09:19 2019
+## Date of summary: Tue Feb 26 21:09:19 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.196 s
+## Fitted with method Port using 81 model solutions performed in 0.199 s
##
## Weighting: none
##
@@ -368,8 +371,8 @@
<div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Tue Feb 26 20:25:09 2019
-## Date of summary: Tue Feb 26 20:25:09 2019
+## Date of fit: Tue Feb 26 21:09:20 2019
+## Date of summary: Tue Feb 26 21:09:20 2019
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -378,7 +381,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.843 s
+## Fitted with method Port using 336 model solutions performed in 0.844 s
##
## Weighting: none
##
@@ -460,8 +463,8 @@
<div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Tue Feb 26 20:25:10 2019
-## Date of summary: Tue Feb 26 20:25:11 2019
+## Date of fit: Tue Feb 26 21:09:21 2019
+## Date of summary: Tue Feb 26 21:09:22 2019
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -561,8 +564,8 @@
<div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Tue Feb 26 20:25:11 2019
-## Date of summary: Tue Feb 26 20:25:11 2019
+## Date of fit: Tue Feb 26 21:09:22 2019
+## Date of summary: Tue Feb 26 21:09:22 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
@@ -621,8 +624,8 @@
<div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.48.1
## R version used for fitting: 3.5.2
-## Date of fit: Tue Feb 26 20:25:11 2019
-## Date of summary: Tue Feb 26 20:25:11 2019
+## Date of fit: Tue Feb 26 21:09:22 2019
+## Date of summary: Tue Feb 26 21:09:22 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
diff --git a/docs/articles/index.html b/docs/articles/index.html
index 49a501b7..9381dedb 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -94,6 +94,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index f6e8af4d..d5d5e3bf 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -64,6 +64,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index c06672f1..af8dbd4e 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -64,6 +64,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html
index b398733b..1926662a 100644
--- a/docs/articles/web_only/FOCUS_Z.html
+++ b/docs/articles/web_only/FOCUS_Z.html
@@ -64,6 +64,9 @@
<li>
<a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/articles/web_only/NAFTA_examples.html b/docs/articles/web_only/NAFTA_examples.html
index bd202a54..cae0cd6b 100644
--- a/docs/articles/web_only/NAFTA_examples.html
+++ b/docs/articles/web_only/NAFTA_examples.html
@@ -64,6 +64,9 @@
<li>
<a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 0295d844..3d49d262 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -64,6 +64,9 @@
<li>
<a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -126,9 +129,9 @@
<a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.318 1.000 2.317 0
-## 1 deSolve, not compiled 3 17.559 7.575 17.551 0
-## 2 Eigenvalue based 3 2.859 1.233 2.857 0
+## 3 deSolve, compiled 3 2.309 1.000 2.307 0
+## 1 deSolve, not compiled 3 17.535 7.594 17.527 0
+## 2 Eigenvalue based 3 2.846 1.233 2.844 0
## user.child sys.child
## 3 0 0
## 1 0 0
@@ -157,8 +160,8 @@
<a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 4.093 1.000 4.090 0
-## 1 deSolve, not compiled 3 37.258 9.103 37.241 0
+## 2 deSolve, compiled 3 4.071 1.000 4.069 0
+## 1 deSolve, not compiled 3 37.139 9.123 37.123 0
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>
diff --git a/docs/news/index.html b/docs/news/index.html
index a66f5bbc..c1644a00 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -94,6 +94,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/AIC.mmkin.html b/docs/reference/AIC.mmkin.html
index 2a4a6de4..1224fbe6 100644
--- a/docs/reference/AIC.mmkin.html
+++ b/docs/reference/AIC.mmkin.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/CAKE_export.html b/docs/reference/CAKE_export.html
index 74e77339..38b8368c 100644
--- a/docs/reference/CAKE_export.html
+++ b/docs/reference/CAKE_export.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/DFOP.solution.html b/docs/reference/DFOP.solution.html
index 40e2a0fa..378d6eb2 100644
--- a/docs/reference/DFOP.solution.html
+++ b/docs/reference/DFOP.solution.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html
index f10805a0..93be7412 100644
--- a/docs/reference/Extract.mmkin.html
+++ b/docs/reference/Extract.mmkin.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -469,8 +472,8 @@
#&gt; }
#&gt; return(mC)
#&gt; }
-#&gt; &lt;bytecode: 0x55555bb55ad0&gt;
-#&gt; &lt;environment: 0x55555c4dcf70&gt;
+#&gt; &lt;bytecode: 0x55555c80a350&gt;
+#&gt; &lt;environment: 0x55555b478bb8&gt;
#&gt;
#&gt; $cost_notrans
#&gt; function (P)
@@ -492,8 +495,8 @@
#&gt; scaleVar = scaleVar)
#&gt; return(mC)
#&gt; }
-#&gt; &lt;bytecode: 0x55555c537298&gt;
-#&gt; &lt;environment: 0x55555c4dcf70&gt;
+#&gt; &lt;bytecode: 0x55555c522e40&gt;
+#&gt; &lt;environment: 0x55555b478bb8&gt;
#&gt;
#&gt; $hessian_notrans
#&gt; parent_0 k_parent_sink
@@ -560,7 +563,7 @@
#&gt; 99.17407
#&gt;
#&gt; $date
-#&gt; [1] "Tue Feb 26 20:23:09 2019"
+#&gt; [1] "Tue Feb 26 21:07:19 2019"
#&gt;
#&gt; $version
#&gt; [1] "0.9.48.1"
diff --git a/docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html b/docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html
index 9babae16..cdceeb0b 100644
--- a/docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html
+++ b/docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html
@@ -101,6 +101,9 @@ in this fit." />
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html b/docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html
index 6e11464e..0f51b1ce 100644
--- a/docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html
+++ b/docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html
@@ -101,6 +101,9 @@ in this fit." />
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/FOCUS_2006_HS_ref_A_to_F.html b/docs/reference/FOCUS_2006_HS_ref_A_to_F.html
index 59219e45..e0b8d760 100644
--- a/docs/reference/FOCUS_2006_HS_ref_A_to_F.html
+++ b/docs/reference/FOCUS_2006_HS_ref_A_to_F.html
@@ -101,6 +101,9 @@ in this fit." />
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/FOCUS_2006_SFO_ref_A_to_F.html b/docs/reference/FOCUS_2006_SFO_ref_A_to_F.html
index 67df3476..d07fb469 100644
--- a/docs/reference/FOCUS_2006_SFO_ref_A_to_F.html
+++ b/docs/reference/FOCUS_2006_SFO_ref_A_to_F.html
@@ -101,6 +101,9 @@ in this fit." />
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/FOCUS_2006_datasets.html b/docs/reference/FOCUS_2006_datasets.html
index 7d38639b..b766c88b 100644
--- a/docs/reference/FOCUS_2006_datasets.html
+++ b/docs/reference/FOCUS_2006_datasets.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/FOMC.solution.html b/docs/reference/FOMC.solution.html
index 43466474..8763c878 100644
--- a/docs/reference/FOMC.solution.html
+++ b/docs/reference/FOMC.solution.html
@@ -101,6 +101,9 @@ The form given here differs slightly from the original reference by Gustafson
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/HS.solution.html b/docs/reference/HS.solution.html
index 048a24c3..940d3186 100644
--- a/docs/reference/HS.solution.html
+++ b/docs/reference/HS.solution.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/IORE.solution.html b/docs/reference/IORE.solution.html
index 9646461c..9a497f92 100644
--- a/docs/reference/IORE.solution.html
+++ b/docs/reference/IORE.solution.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/NAFTA_SOP_2015.html b/docs/reference/NAFTA_SOP_2015.html
index f4d89222..c8b97493 100644
--- a/docs/reference/NAFTA_SOP_2015.html
+++ b/docs/reference/NAFTA_SOP_2015.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/NAFTA_SOP_Attachment.html b/docs/reference/NAFTA_SOP_Attachment.html
index 63b47855..373da052 100644
--- a/docs/reference/NAFTA_SOP_Attachment.html
+++ b/docs/reference/NAFTA_SOP_Attachment.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -133,7 +136,7 @@
<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
- <p>Additionally, a list (NAFTA_SOP_Attachment) containing 16 datasets suitable
+ <p>A list (NAFTA_SOP_Attachment) containing 16 datasets suitable
for the evaluation with <code><a href='nafta.html'>nafta</a></code></p>
<h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
diff --git a/docs/reference/SFO.solution.html b/docs/reference/SFO.solution.html
index dd04ad1a..dea4527e 100644
--- a/docs/reference/SFO.solution.html
+++ b/docs/reference/SFO.solution.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/SFORB.solution.html b/docs/reference/SFORB.solution.html
index 19566257..a09f3d94 100644
--- a/docs/reference/SFORB.solution.html
+++ b/docs/reference/SFORB.solution.html
@@ -101,6 +101,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/add_err.html b/docs/reference/add_err.html
index 40f23bee..8b6668f1 100644
--- a/docs/reference/add_err.html
+++ b/docs/reference/add_err.html
@@ -99,6 +99,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/endpoints.html b/docs/reference/endpoints.html
index bd23c95a..4d777ce2 100644
--- a/docs/reference/endpoints.html
+++ b/docs/reference/endpoints.html
@@ -100,6 +100,9 @@ with the advantage that the SFORB model can also be used for metabolites." />
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/geometric_mean.html b/docs/reference/geometric_mean.html
index e5a12b7d..f8beb987 100644
--- a/docs/reference/geometric_mean.html
+++ b/docs/reference/geometric_mean.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/ilr.html b/docs/reference/ilr.html
index 0ab8f0a3..02c96b92 100644
--- a/docs/reference/ilr.html
+++ b/docs/reference/ilr.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 4e57fd3d..e1f149e2 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -94,6 +94,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -280,6 +283,12 @@
</tr><tr>
<td>
+ <p><code><a href="NAFTA_SOP_Attachment.html">NAFTA_SOP_Attachment</a></code> </p>
+ </td>
+ <td><p>Example datasets from Attachment 1 to the NAFTA SOP published 2015</p></td>
+ </tr><tr>
+
+ <td>
<p><code><a href="mccall81_245T.html">mccall81_245T</a></code> </p>
</td>
<td><p>Datasets on aerobic soil metabolism of 2,4,5-T in six soils</p></td>
diff --git a/docs/reference/logLik.mkinfit.html b/docs/reference/logLik.mkinfit.html
index 2f211431..229f8b04 100644
--- a/docs/reference/logLik.mkinfit.html
+++ b/docs/reference/logLik.mkinfit.html
@@ -114,6 +114,9 @@ In the case of iterative reweighting, the variances obtained by this
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/logistic.solution.html b/docs/reference/logistic.solution.html
index a30059fe..9687d7d3 100644
--- a/docs/reference/logistic.solution.html
+++ b/docs/reference/logistic.solution.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/max_twa_parent.html b/docs/reference/max_twa_parent.html
index 17be80d5..f62ed5d5 100644
--- a/docs/reference/max_twa_parent.html
+++ b/docs/reference/max_twa_parent.html
@@ -101,6 +101,9 @@ guidance." />
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html
index 2e5f0ac2..bfb34489 100644
--- a/docs/reference/mccall81_245T.html
+++ b/docs/reference/mccall81_245T.html
@@ -99,6 +99,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -160,8 +163,8 @@
<span class='kw'>anisole</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> </div><div class='input'> <span class='no'>fit.1</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/subset'>subset</a></span>(<span class='no'>mccall81_245T</span>, <span class='no'>soil</span> <span class='kw'>==</span> <span class='st'>"Commerce"</span>), <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.1</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:32 2019
-#&gt; Date of summary: Tue Feb 26 20:23:32 2019
+#&gt; Date of fit: Tue Feb 26 21:07:42 2019
+#&gt; Date of summary: Tue Feb 26 21:07:42 2019
#&gt;
#&gt; Equations:
#&gt; d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245
@@ -171,7 +174,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 574 model solutions performed in 3.765 s
+#&gt; Fitted with method Port using 574 model solutions performed in 3.766 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -249,8 +252,8 @@
<span class='kw'>fixed_parms</span> <span class='kw'>=</span> <span class='st'>"k_phenol_sink"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.2</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:34 2019
-#&gt; Date of summary: Tue Feb 26 20:23:34 2019
+#&gt; Date of fit: Tue Feb 26 21:07:44 2019
+#&gt; Date of summary: Tue Feb 26 21:07:44 2019
#&gt;
#&gt; Equations:
#&gt; d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245
@@ -260,7 +263,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 246 model solutions performed in 1.601 s
+#&gt; Fitted with method Port using 246 model solutions performed in 1.612 s
#&gt;
#&gt; Weighting: none
#&gt;
diff --git a/docs/reference/mkin_long_to_wide.html b/docs/reference/mkin_long_to_wide.html
index f034f955..ee781c11 100644
--- a/docs/reference/mkin_long_to_wide.html
+++ b/docs/reference/mkin_long_to_wide.html
@@ -99,6 +99,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mkin_wide_to_long.html b/docs/reference/mkin_wide_to_long.html
index e874f9bf..f2b9bef7 100644
--- a/docs/reference/mkin_wide_to_long.html
+++ b/docs/reference/mkin_wide_to_long.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mkinds.html b/docs/reference/mkinds.html
index a9362c2b..3be872e8 100644
--- a/docs/reference/mkinds.html
+++ b/docs/reference/mkinds.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mkinerrmin.html b/docs/reference/mkinerrmin.html
index 149006a5..60769486 100644
--- a/docs/reference/mkinerrmin.html
+++ b/docs/reference/mkinerrmin.html
@@ -98,6 +98,9 @@ chi-squared test as defined in the FOCUS kinetics report from 2006." />
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html
index 84c0fc49..2494faf9 100644
--- a/docs/reference/mkinfit.html
+++ b/docs/reference/mkinfit.html
@@ -107,6 +107,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -438,8 +441,8 @@
<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='st'>"FOMC"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:36 2019
-#&gt; Date of summary: Tue Feb 26 20:23:36 2019
+#&gt; Date of fit: Tue Feb 26 21:07:47 2019
+#&gt; Date of summary: Tue Feb 26 21:07:47 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -515,7 +518,7 @@
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='co'># Fit the model to the FOCUS example dataset D using defaults</span>
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>,
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)))</div><div class='output co'>#&gt; User System verstrichen
-#&gt; 1.081 0.000 1.081 </div><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink
+#&gt; 1.111 0.000 1.112 </div><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink
#&gt; 99.59848 -3.03822 -2.98030 -5.24750 </div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; $ff
#&gt; parent_sink parent_m1 m1_sink
#&gt; 0.485524 0.514476 1.000000
@@ -590,7 +593,7 @@
#&gt; Model cost at call 146 : 371.2134
#&gt; Optimisation by method Port successfully terminated.
#&gt; User System verstrichen
-#&gt; 0.812 0.000 0.812 </div><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink
+#&gt; 0.826 0.000 0.827 </div><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink
#&gt; 99.59848 -3.03822 -2.98030 -5.24750 </div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; $ff
#&gt; parent_sink parent_m1 m1_sink
#&gt; 0.485524 0.514476 1.000000
@@ -628,8 +631,8 @@
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>f.noweight</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f.noweight</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:48 2019
-#&gt; Date of summary: Tue Feb 26 20:23:48 2019
+#&gt; Date of fit: Tue Feb 26 21:07:59 2019
+#&gt; Date of summary: Tue Feb 26 21:07:59 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -637,7 +640,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 186 model solutions performed in 0.852 s
+#&gt; Fitted with method Port using 186 model solutions performed in 0.841 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -745,8 +748,8 @@
#&gt; 120 m1 33.31 28.78984 4.520e+00</div><div class='input'><span class='no'>f.irls</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>reweight.method</span> <span class='kw'>=</span> <span class='st'>"obs"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f.irls</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:51 2019
-#&gt; Date of summary: Tue Feb 26 20:23:51 2019
+#&gt; Date of fit: Tue Feb 26 21:08:02 2019
+#&gt; Date of summary: Tue Feb 26 21:08:02 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -754,7 +757,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 551 model solutions performed in 2.6 s
+#&gt; Fitted with method Port using 551 model solutions performed in 2.596 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -867,8 +870,8 @@
#&gt; 120 m1 33.31 28.80898 4.501e+00 2.722</div><div class='input'><span class='no'>f.w.mean</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>weight</span> <span class='kw'>=</span> <span class='st'>"mean"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f.w.mean</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:52 2019
-#&gt; Date of summary: Tue Feb 26 20:23:52 2019
+#&gt; Date of fit: Tue Feb 26 21:08:03 2019
+#&gt; Date of summary: Tue Feb 26 21:08:03 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -876,7 +879,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 155 model solutions performed in 0.704 s
+#&gt; Fitted with method Port using 155 model solutions performed in 0.701 s
#&gt;
#&gt; Weighting: mean
#&gt;
@@ -985,8 +988,8 @@
<span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f.w.value</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:53 2019
-#&gt; Date of summary: Tue Feb 26 20:23:53 2019
+#&gt; Date of fit: Tue Feb 26 21:08:03 2019
+#&gt; Date of summary: Tue Feb 26 21:08:03 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -994,7 +997,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 174 model solutions performed in 0.796 s
+#&gt; Fitted with method Port using 174 model solutions performed in 0.795 s
#&gt;
#&gt; Weighting: manual
#&gt;
@@ -1105,8 +1108,8 @@
<span class='no'>f.w.man</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>dw</span>, <span class='kw'>err</span> <span class='kw'>=</span> <span class='st'>"err.man"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f.w.man</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:54 2019
-#&gt; Date of summary: Tue Feb 26 20:23:54 2019
+#&gt; Date of fit: Tue Feb 26 21:08:05 2019
+#&gt; Date of summary: Tue Feb 26 21:08:05 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -1114,7 +1117,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 270 model solutions performed in 1.238 s
+#&gt; Fitted with method Port using 270 model solutions performed in 1.24 s
#&gt;
#&gt; Weighting: manual
#&gt;
@@ -1223,8 +1226,8 @@
<span class='kw'>reweight.method</span> <span class='kw'>=</span> <span class='st'>"obs"</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f.w.man.irls</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:23:58 2019
-#&gt; Date of summary: Tue Feb 26 20:23:58 2019
+#&gt; Date of fit: Tue Feb 26 21:08:08 2019
+#&gt; Date of summary: Tue Feb 26 21:08:08 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -1232,7 +1235,7 @@
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 692 model solutions performed in 3.182 s
+#&gt; Fitted with method Port using 692 model solutions performed in 3.192 s
#&gt;
#&gt; Weighting: manual
#&gt;
diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html
index a6dd68c5..8c2ec38c 100644
--- a/docs/reference/mkinmod.html
+++ b/docs/reference/mkinmod.html
@@ -102,6 +102,9 @@ For the definition of model types and their parameters, the equations given
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -231,7 +234,7 @@ For the definition of model types and their parameters, the equations given
<span class='no'>SFO_SFO</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(
<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>),
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>verbose</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; Compilation argument:
-#&gt; /usr/lib/R/bin/R CMD SHLIB file240f6aec3e43.c 2&gt; file240f6aec3e43.c.err.txt
+#&gt; /usr/lib/R/bin/R CMD SHLIB file3dbe7c3499b.c 2&gt; file3dbe7c3499b.c.err.txt
#&gt; Program source:
#&gt; 1: #include &lt;R.h&gt;
#&gt; 2:
diff --git a/docs/reference/mkinparplot.html b/docs/reference/mkinparplot.html
index f0706605..e819befe 100644
--- a/docs/reference/mkinparplot.html
+++ b/docs/reference/mkinparplot.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mkinplot.html b/docs/reference/mkinplot.html
index 2eed795a..573e8e7c 100644
--- a/docs/reference/mkinplot.html
+++ b/docs/reference/mkinplot.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html
index bab6deb8..fb4afa9a 100644
--- a/docs/reference/mkinpredict.html
+++ b/docs/reference/mkinpredict.html
@@ -99,6 +99,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -325,7 +328,7 @@
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>),
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#&gt; time parent m1
#&gt; 201 20 4.978707 27.46227</div><div class='output co'>#&gt; User System verstrichen
-#&gt; 0.003 0.000 0.004 </div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(
+#&gt; 0.004 0.000 0.003 </div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k_parent_m1</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='kw'>k_parent_sink</span> <span class='kw'>=</span> <span class='fl'>0.1</span>, <span class='kw'>k_m1_sink</span> <span class='kw'>=</span> <span class='fl'>0.01</span>),
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>),
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#&gt; time parent m1
@@ -335,7 +338,7 @@
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>),
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>, <span class='kw'>use_compiled</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#&gt; time parent m1
#&gt; 201 20 4.978707 27.46227</div><div class='output co'>#&gt; User System verstrichen
-#&gt; 0.039 0.000 0.040 </div><div class='input'>
+#&gt; 0.039 0.000 0.039 </div><div class='input'>
</div><div class='input'> <span class='co'># Predict from a fitted model</span>
<span class='no'>f</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_C</span>)</div><div class='output co'>#&gt; Model cost at call 1 : 552.5739
#&gt; Model cost at call 3 : 552.5739
diff --git a/docs/reference/mkinresplot.html b/docs/reference/mkinresplot.html
index e1ba5acb..c216d8b8 100644
--- a/docs/reference/mkinresplot.html
+++ b/docs/reference/mkinresplot.html
@@ -100,6 +100,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mkinsub.html b/docs/reference/mkinsub.html
index 3e0bdcbd..fee17102 100644
--- a/docs/reference/mkinsub.html
+++ b/docs/reference/mkinsub.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html
index 0078baed..44aaaa79 100644
--- a/docs/reference/mmkin.html
+++ b/docs/reference/mmkin.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -191,8 +194,8 @@
<span class='no'>time_1</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(<span class='no'>fits.4</span> <span class='kw'>&lt;-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))
<span class='no'>time_default</span></div><div class='output co'>#&gt; User System verstrichen
-#&gt; 0.059 0.021 6.916 </div><div class='input'><span class='no'>time_1</span></div><div class='output co'>#&gt; User System verstrichen
-#&gt; 22.506 0.000 22.518 </div><div class='input'>
+#&gt; 0.041 0.032 6.955 </div><div class='input'><span class='no'>time_1</span></div><div class='output co'>#&gt; User System verstrichen
+#&gt; 22.625 0.004 22.646 </div><div class='input'>
<span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fits.0</span><span class='kw'>[[</span><span class='st'>"SFO_lin"</span>, <span class='fl'>2</span>]])</div><div class='output co'>#&gt; $ff
#&gt; parent_M1 parent_sink M1_M2 M1_sink
#&gt; 0.7340480 0.2659520 0.7505686 0.2494314
diff --git a/docs/reference/nafta.html b/docs/reference/nafta.html
index 9b879786..c05ce4cb 100644
--- a/docs/reference/nafta.html
+++ b/docs/reference/nafta.html
@@ -99,6 +99,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/plot.mkinfit.html b/docs/reference/plot.mkinfit.html
index 44ac2967..7255b324 100644
--- a/docs/reference/plot.mkinfit.html
+++ b/docs/reference/plot.mkinfit.html
@@ -102,6 +102,9 @@ If the current plot device is a tikz device,
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/plot.mmkin.html b/docs/reference/plot.mmkin.html
index dd7b619d..e1651208 100644
--- a/docs/reference/plot.mmkin.html
+++ b/docs/reference/plot.mmkin.html
@@ -101,6 +101,9 @@ If the current plot device is a tikz device,
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/plot.nafta.html b/docs/reference/plot.nafta.html
index 7949d36c..753cbd6a 100644
--- a/docs/reference/plot.nafta.html
+++ b/docs/reference/plot.nafta.html
@@ -101,6 +101,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/print.mkinds.html b/docs/reference/print.mkinds.html
index 1d858500..96607b02 100644
--- a/docs/reference/print.mkinds.html
+++ b/docs/reference/print.mkinds.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/print.mkinmod.html b/docs/reference/print.mkinmod.html
index ace71925..7e138697 100644
--- a/docs/reference/print.mkinmod.html
+++ b/docs/reference/print.mkinmod.html
@@ -97,6 +97,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/print.nafta.html b/docs/reference/print.nafta.html
index 44f1f6e5..31bd2956 100644
--- a/docs/reference/print.nafta.html
+++ b/docs/reference/print.nafta.html
@@ -99,6 +99,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/schaefer07_complex_case.html b/docs/reference/schaefer07_complex_case.html
index b7ba3d96..1e8a6d9e 100644
--- a/docs/reference/schaefer07_complex_case.html
+++ b/docs/reference/schaefer07_complex_case.html
@@ -99,6 +99,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/sigma_twocomp.html b/docs/reference/sigma_twocomp.html
index f44a1c14..eca5deec 100644
--- a/docs/reference/sigma_twocomp.html
+++ b/docs/reference/sigma_twocomp.html
@@ -102,6 +102,9 @@ This is the error model used for example by Werner et al. (1978). The model
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html
index 6ec72f80..8d9e0287 100644
--- a/docs/reference/summary.mkinfit.html
+++ b/docs/reference/summary.mkinfit.html
@@ -100,6 +100,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -208,8 +211,8 @@
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>)), <span class='no'>FOCUS_2006_A</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:24:50 2019
-#&gt; Date of summary: Tue Feb 26 20:24:50 2019
+#&gt; Date of fit: Tue Feb 26 21:09:01 2019
+#&gt; Date of summary: Tue Feb 26 21:09:01 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent_sink * parent
diff --git a/docs/reference/synthetic_data_for_UBA.html b/docs/reference/synthetic_data_for_UBA.html
index 6363db6f..6e36e72f 100644
--- a/docs/reference/synthetic_data_for_UBA.html
+++ b/docs/reference/synthetic_data_for_UBA.html
@@ -112,6 +112,9 @@ Compare also the code in the example section to see the degradation models." />
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html
index b3ec4699..12904a1f 100644
--- a/docs/reference/test_data_from_UBA_2014.html
+++ b/docs/reference/test_data_from_UBA_2014.html
@@ -98,6 +98,9 @@
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html
index 6e65f609..115ee0ca 100644
--- a/docs/reference/transform_odeparms.html
+++ b/docs/reference/transform_odeparms.html
@@ -105,6 +105,9 @@ The transformation of sets of formation fractions is fragile, as it supposes
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -202,8 +205,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>) <span class='co'># See transformed and backtransformed parameters</span></div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:24:58 2019
-#&gt; Date of summary: Tue Feb 26 20:24:58 2019
+#&gt; Date of fit: Tue Feb 26 21:09:09 2019
+#&gt; Date of summary: Tue Feb 26 21:09:09 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -211,7 +214,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 153 model solutions performed in 0.707 s
+#&gt; Fitted with method Port using 153 model solutions performed in 0.709 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -278,8 +281,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
</div><div class='input'><span class='no'>fit.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>transform_rates</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.2</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:25:00 2019
-#&gt; Date of summary: Tue Feb 26 20:25:00 2019
+#&gt; Date of fit: Tue Feb 26 21:09:11 2019
+#&gt; Date of summary: Tue Feb 26 21:09:11 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -287,7 +290,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 350 model solutions performed in 1.584 s
+#&gt; Fitted with method Port using 350 model solutions performed in 1.588 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -366,8 +369,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
<span class='no'>fit.ff</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.ff</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:25:01 2019
-#&gt; Date of summary: Tue Feb 26 20:25:01 2019
+#&gt; Date of fit: Tue Feb 26 21:09:12 2019
+#&gt; Date of summary: Tue Feb 26 21:09:12 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -375,7 +378,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 186 model solutions performed in 0.867 s
+#&gt; Fitted with method Port using 186 model solutions performed in 0.849 s
#&gt;
#&gt; Weighting: none
#&gt;
@@ -450,8 +453,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
<span class='no'>fit.ff.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO.ff.2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.ff.2</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.48.1
#&gt; R version used for fitting: 3.5.2
-#&gt; Date of fit: Tue Feb 26 20:25:02 2019
-#&gt; Date of summary: Tue Feb 26 20:25:02 2019
+#&gt; Date of fit: Tue Feb 26 21:09:13 2019
+#&gt; Date of summary: Tue Feb 26 21:09:13 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -459,7 +462,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 104 model solutions performed in 0.472 s
+#&gt; Fitted with method Port using 104 model solutions performed in 0.47 s
#&gt;
#&gt; Weighting: none
#&gt;

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