Static documentation rebuilt by staticdocs::build_site()

1 files changed, 5 insertions, 21 deletions

diff --git a/inst/web/index.html b/inst/web/index.html
index bb85e72f..17c5ba6e 100644
--- a/inst/web/index.html
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@@ -66,15 +66,6 @@ if several compartments are involved.</p>
 <pre><code class="r">install.packages(&quot;mkin&quot;)
 </code></pre>
 
-<p>If looking for the latest features, you can install directly from 
-<a href="http://github.com/jranke/mkin">github</a>, e.g.  using the <code>devtools</code> package.
-Using <code>quick = TRUE</code> skips docs, multiple-architecture builds, demos, and
-vignettes, to make installation as fast and painless as possible.</p>
-
-<pre><code class="r">require(devtools)
-install_github(&quot;jranke/mkin&quot;, quick = TRUE)
-</code></pre>
-
 <h2>Background</h2>
 
 <p>In the regulatory evaluation of chemical substances like plant protection
@@ -108,7 +99,7 @@ reversible binding (SFORB) model, which will automatically create
 two latent state variables for the observed variable.</li>
 <li>As of version 0.9-39, fitting of several models to several datasets, optionally in 
 parallel, is supported, see for example
-<a href="http://kinfit.r-forge.r-project.org/mkin_static/plot.mmkin.html"><code>plot.mmkin</code></a> </li>
+<a href="http://kinfit.r-forge.r-project.org/mkin_static/plot.mmkin.html"><code>plot.mmkin</code></a>.</li>
 <li>Model solution (forward modelling) in the function
 <a href="http://kinfit.r-forge.r-project.org/mkin_static/mkinpredict.html"><code>mkinpredict</code></a> 
 is performed either using the analytical solution for the case of 
@@ -121,10 +112,6 @@ generated C code, see<br/>
 The autogeneration of C code was
 inspired by the <a href="https://github.com/karlines/ccSolve"><code>ccSolve</code></a> package. Thanks
 to Karline Soetaert for her work on that.</li>
-<li>Model optimisation with 
-<a href="http://kinfit.r-forge.r-project.org/mkin_static/mkinfit.html"><code>mkinfit</code></a>
-internally using the <code>modFit</code> function from the <code>FME</code> package,
-but using the Port routine <code>nlminb</code> per default.</li>
 <li>By default, kinetic rate constants and kinetic formation fractions are
 transformed internally using
 <a href="http://kinfit.r-forge.r-project.org/mkin_static/transform_odeparms.html"><code>transform_odeparms</code></a>
@@ -152,9 +139,7 @@ as in KinGUII and CAKE (see below). Simply add the argument
 componenent for each of the observed variables will be optimised
 in a second stage after the primary optimisation algorithm has converged.</li>
 <li>When a metabolite decline phase is not described well by SFO kinetics, 
-either IORE kinetics (often producing failures of the integration algorithm)
-or SFORB kinetics (working nicely) can be used for the metabolite, adding one
-respectively two parameters to the system.</li>
+SFORB kinetics can be used for the metabolite.</li>
 </ul>
 
 <h2>GUI</h2>
@@ -171,9 +156,8 @@ and one for the <a href="https://github.com/jranke/mkin/blob/master/NEWS.md">git
 <h2>Credits and historical remarks</h2>
 
 <p><code>mkin</code> would not be possible without the underlying software stack consisting
-of R and the packages <a href="http://cran.r-project.org/package=deSolve">deSolve</a>,
-<a href="http://cran.r-project.org/package=minpack.lm">minpack.lm</a> and
-<a href="http://cran.r-project.org/package=FME">FME</a>, to say the least.</p>
+of R and the packages <a href="http://cran.r-project.org/package=deSolve">deSolve</a>
+and <a href="http://cran.r-project.org/package=FME">FME</a>, to say the least.</p>
 
 <p>It could not have been written without me being introduced to regulatory fate
 modelling of pesticides by Adrian Gurney during my time at Harlan Laboratories
@@ -187,7 +171,7 @@ as detailed in their guidance document from 2006, slightly updated in 2011 and
 BayerCropScience, which is based on the MatLab runtime environment.</p>
 
 <p>The companion package 
-<a href="http://kinfit.r-forge.r-project.org/kinfit_static/index.html">kinfit</a> was 
+<a href="http://kinfit.r-forge.r-project.org/kinfit_static/index.html">kinfit</a> (now deprecated) was 
 <a href="https://r-forge.r-project.org/scm/viewvc.php?view=rev&amp;root=kinfit&amp;revision=2">started in 2008</a> and 
 <a href="http://cran.r-project.org/src/contrib/Archive/kinfit/">first published</a> on
 CRAN on 01 May 2010.</p>