Check and test locallyHEADmain

2 files changed, 18 insertions, 17 deletions

diff --git a/log/check.log b/log/check.log
index 0c54a49d..4ba2d60b 100644
--- a/log/check.log
+++ b/log/check.log
@@ -1,5 +1,5 @@
 * using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’
-* using R version 4.4.2 (2024-10-31)
+* using R version 4.5.0 (2025-04-11)
 * using platform: x86_64-pc-linux-gnu
 * R was compiled by
     gcc (Debian 12.2.0-14) 12.2.0
@@ -9,10 +9,12 @@
 * using options ‘--no-tests --as-cran’
 * checking for file ‘mkin/DESCRIPTION’ ... OK
 * checking extension type ... Package
-* this is package ‘mkin’ version ‘1.2.9’
+* this is package ‘mkin’ version ‘1.2.10’
 * package encoding: UTF-8
-* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
+* checking CRAN incoming feasibility ... NOTE
 Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’
+
+Size of tarball: 5337779 bytes
 * checking package namespace information ... OK
 * checking package dependencies ... OK
 * checking if this is a source package ... OK
@@ -24,8 +26,7 @@ Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’
 * checking whether package ‘mkin’ can be installed ... OK
 * checking installed package size ... OK
 * checking package directory ... OK
-* checking for future file timestamps ... NOTE
-unable to verify current time
+* checking for future file timestamps ... OK
 * checking ‘build’ directory ... OK
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
@@ -62,12 +63,12 @@ unable to verify current time
 * checking sizes of PDF files under ‘inst/doc’ ... OK
 * checking installed files from ‘inst/doc’ ... OK
 * checking files in ‘vignettes’ ... OK
-* checking examples ... [10s/10s] OK
+* checking examples ... [12s/12s] OK
 * checking for unstated dependencies in ‘tests’ ... OK
 * checking tests ... SKIPPED
 * checking for unstated dependencies in vignettes ... OK
 * checking package vignettes ... OK
-* checking re-building of vignette outputs ... [13s/10s] OK
+* checking re-building of vignette outputs ... [17s/13s] OK
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
diff --git a/log/test.log b/log/test.log
index f475b7d5..7bf36295 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,44 +1,44 @@
 ℹ Testing mkin
 ✔ | F W  S  OK | Context
 ✔ |          5 | AIC calculation
-✔ |          5 | Analytical solutions for coupled models [1.5s]
+✔ |          5 | Analytical solutions for coupled models [1.6s]
 ✔ |          5 | Calculation of Akaike weights
 ✔ |          3 | Export dataset for reading into CAKE
-✔ |          6 | Use of precompiled symbols in mkinpredict [3.2s]
+✔ |          6 | Use of precompiled symbols in mkinpredict [3.4s]
 ✔ |         12 | Confidence intervals and p-values
 ✔ |          1 | Solutions with deSolve
 ✔ |      1  12 | Dimethenamid data from 2018 [13.1s]
-✔ |         14 | Error model fitting [2.5s]
+✔ |         14 | Error model fitting [2.6s]
 ✔ |          5 | Time step normalisation
 ✔ |          4 | Calculation of FOCUS chi2 error levels
 ✔ |         14 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
 ✔ |          4 | Test fitting the decline of metabolites from their maximum
 ✔ |          1 | Fitting the logistic model
-✔ |         10 | Batch fitting and diagnosing hierarchical kinetic models [19.6s]
-✔ |      2  16 | Nonlinear mixed-effects models [145.0s]
+✔ |         10 | Batch fitting and diagnosing hierarchical kinetic models [19.9s]
+✔ |      2  16 | Nonlinear mixed-effects models [145.2s]
 ✔ |          3 | Test dataset classes mkinds and mkindsg
 ✔ |         10 | Special cases of mkinfit calls
 ✔ |          3 | mkinfit features
 ✔ |          8 | mkinmod model generation and printing
 ✔ |          4 | Model predictions with mkinpredict
-✔ |         12 | Multistart method for saem.mmkin models [22.9s]
-✔ |         16 | Evaluations according to 2015 NAFTA guidance [1.8s]
+✔ |         12 | Multistart method for saem.mmkin models [23.4s]
+✔ |         16 | Evaluations according to 2015 NAFTA guidance [1.5s]
 ✔ |          9 | Nonlinear mixed-effects models with nlme [4.0s]
 ✔ |         15 | Plotting [4.7s]
 ✔ |          4 | Residuals extracted from mkinfit models
-✔ |      1  38 | saemix parent models [35.9s]
+✔ |      1  38 | saemix parent models [36.0s]
 ✔ |          2 | Complex test case from Schaefer et al. (2007) Piacenza paper
 ✔ |         11 | Processing of residue series
 ✔ |         10 | Fitting the SFORB model [1.7s]
 ✔ |          1 | Summaries of old mkinfit objects
 ✔ |          5 | Summary
 ✔ |          4 | Results for synthetic data established in expertise for UBA (Ranke 2014)
-✔ |          9 | Hypothesis tests [2.9s]
+✔ |          9 | Hypothesis tests [2.8s]
 ✔ |          4 | Calculation of maximum time weighted average concentrations (TWAs)
 ✔ |          2 | water-sediment
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 264.5 s
+Duration: 265.4 s
 
 ── Skipped tests (4) ───────────────────────────────────────────────────────────
 • Fitting this ODE model with saemix takes about 5 minutes on my new system