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authorJohannes Ranke <jranke@uni-bremen.de>2022-12-02 13:25:56 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-12-02 13:25:56 +0100
commit240568bf65f2257f1185927ac811dde18aeabe1d (patch)
treef887059e3735c5ee4bae2ae8e8132ddc9329e65e /log/test.log
parent9a1136dc5550663b352239502a39a07601959644 (diff)
Avoid error message at testthat termination
https://github.com/r-lib/processx/issues/236
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log47
1 files changed, 23 insertions, 24 deletions
diff --git a/log/test.log b/log/test.log
index 84fa49b9..5764f209 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,53 +1,53 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [4.2s]
+✔ | 5 | Analytical solutions for coupled models [3.3s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
-✔ | 12 | Confidence intervals and p-values [1.2s]
-✔ | 1 12 | Dimethenamid data from 2018 [42.0s]
+✔ | 12 | Confidence intervals and p-values [1.1s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.9s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_dmta.R:98'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [6.5s]
+✔ | 14 | Error model fitting [4.9s]
✔ | 5 | Time step normalisation
-✔ | 4 | Calculation of FOCUS chi2 error levels [0.7s]
-✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.1s]
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.5s]
-✔ | 1 | Fitting the logistic model [0.3s]
-✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [54.1s]
-✔ | 1 11 | Nonlinear mixed-effects models [14.3s]
+✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
+✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
+✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
+✔ | 1 | Fitting the logistic model [0.2s]
+✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [41.4s]
+✔ | 1 11 | Nonlinear mixed-effects models [13.3s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_mixed.R:78'): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ | 3 | Test dataset classes mkinds and mkindsg
-✔ | 10 | Special cases of mkinfit calls [0.8s]
-✔ | 3 | mkinfit features [0.9s]
-✔ | 8 | mkinmod model generation and printing [0.3s]
+✔ | 10 | Special cases of mkinfit calls [0.6s]
+✔ | 3 | mkinfit features [0.7s]
+✔ | 8 | mkinmod model generation and printing [0.2s]
✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 12 | Multistart method for saem.mmkin models [80.1s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.8s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [11.4s]
-✔ | 15 | Plotting [12.1s]
+✔ | 12 | Multistart method for saem.mmkin models [47.5s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.3s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [9.5s]
+✔ | 15 | Plotting [10.2s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [85.9s]
+✔ | 1 36 | saemix parent models [73.0s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
────────────────────────────────────────────────────────────────────────────────
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.9s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
✔ | 11 | Processing of residue series
-✔ | 10 | Fitting the SFORB model [4.6s]
+✔ | 10 | Fitting the SFORB model [3.9s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.9s]
-✔ | 9 | Hypothesis tests [11.0s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
+✔ | 9 | Hypothesis tests [8.4s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 342.6 s
+Duration: 261.1 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
@@ -55,4 +55,3 @@ Duration: 342.6 s
• This still takes almost 2.5 minutes although we do not solve ODEs (1)
[ FAIL 0 | WARN 0 | SKIP 3 | PASS 270 ]
-Error while shutting down parallel: unable to terminate some child processes

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