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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-26 09:07:04 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-26 09:07:04 +0200
commit3c5b2596daef4ed0ee5c38a7141fdf48dbe7c070 (patch)
treeaf1228baf8b057fd183f8cf6e3ecaa9495b7f030 /log/test.log
parent06df20703a9390692ab1ece3ae1702a71fff05ae (diff)
Reduced sfo model for multistart.saem.mkin tests
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log26
1 files changed, 13 insertions, 13 deletions
diff --git a/log/test.log b/log/test.log
index c5bc0e44..d9dcffb9 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,11 +1,11 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.2s]
+✔ | 5 | Analytical solutions for coupled models [3.3s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [32.0s]
+✔ | 1 12 | Dimethenamid data from 2018 [32.1s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
@@ -16,7 +16,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.1s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.2s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
@@ -27,31 +27,31 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 4 | Multistart method for saem.mmkin models [33.5s]
+✔ | 5 | Multistart method for saem.mmkin models [34.8s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.3s]
✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s]
-✔ | 16 | Plotting [9.9s]
+✔ | 16 | Plotting [10.0s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 35 | saemix parent models [71.4s]
+✔ | 1 35 | saemix parent models [65.3s]
────────────────────────────────────────────────────────────────────────────────
-Skip (test_saemix_parent.R:143:3): We can also use mkin solution methods for saem
+Skip (test_saemix_parent.R:142:3): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
────────────────────────────────────────────────────────────────────────────────
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
✔ | 11 | Processing of residue series
-✔ | 7 | Fitting the SFORB model [3.8s]
+✔ | 7 | Fitting the SFORB model [3.7s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3s]
-✔ | 9 | Hypothesis tests [8.2s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
+✔ | 9 | Hypothesis tests [8.1s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 203.0 s
+Duration: 198.3 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
• This still takes almost 2.5 minutes although we do not solve ODEs (1)
-[ FAIL 0 | WARN 0 | SKIP 3 | PASS 257 ]
+[ FAIL 0 | WARN 0 | SKIP 3 | PASS 258 ]

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