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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-26 01:17:30 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-26 01:32:33 +0200
commit6b910647d22e54a8c0b9c7f837af8dce150d5ee2 (patch)
tree75cbe86abe87ae6f333b91d1d40c188fe8fdb2e2 /log/test.log
parentab47bcc8075b4361aa9db2a2ebfd7e82f92326b0 (diff)
Try to make multistart (more) reproducible
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log18
1 files changed, 9 insertions, 9 deletions
diff --git a/log/test.log b/log/test.log
index 3de5a60a..4515f383 100644
--- a/log/test.log
+++ b/log/test.log
@@ -5,18 +5,18 @@
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [33.0s]
+✔ | 1 12 | Dimethenamid data from 2018 [32.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [5.1s]
+✔ | 14 | Error model fitting [5.0s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.9s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.3s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
@@ -27,12 +27,12 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 3 | Multistart method for saem.mmkin models [19.1s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.0s]
+✔ | 3 | Multistart method for saem.mmkin models [18.4s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s]
✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s]
-✔ | 16 | Plotting [10.6s]
+✔ | 16 | Plotting [10.2s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 35 | saemix parent models [71.6s]
+✔ | 1 35 | saemix parent models [72.5s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_saemix_parent.R:143:3): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
@@ -43,11 +43,11 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
-✔ | 9 | Hypothesis tests [8.2s]
+✔ | 9 | Hypothesis tests [8.0s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 191.7 s
+Duration: 189.5 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

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