aboutsummaryrefslogtreecommitdiff
path: root/log/test.log
diff options
context:
space:
mode:
authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-08-08 16:56:59 +0200
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-08-08 16:56:59 +0200
commit71d2f67189eaaad9b8d61d0f5c709f8d7be65a68 (patch)
tree8f2f2c0dcfdd62e92928f0c60349ef3113ae994a /log/test.log
parentec04610fca09cedad7bc8c367ae6884a1bd7b7f6 (diff)
Update docs, check and test on RStudio server
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log76
1 files changed, 32 insertions, 44 deletions
diff --git a/log/test.log b/log/test.log
index 2f1b6949..3bca2e6a 100644
--- a/log/test.log
+++ b/log/test.log
@@ -4,59 +4,47 @@
✔ | 5 | Analytical solutions for coupled models [2.9s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
-✔ | 6 | Use of precompiled symbols in mkinpredict [5.7s]
-✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [33.1s]
-────────────────────────────────────────────────────────────────────────────────
-Skip ('test_dmta.R:88:3'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
-Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
-────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [7.5s]
+✔ | 6 | Use of precompiled symbols in mkinpredict [6.6s]
+✔ | 12 | Confidence intervals and p-values [1.1s]
+✔ | 1 12 | Dimethenamid data from 2018 [32.2s]
+✔ | 14 | Error model fitting [5.4s]
✔ | 5 | Time step normalisation
-✔ | 4 | Calculation of FOCUS chi2 error levels [0.5s]
-✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7s]
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
-✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [43.6s]
-✔ | 2 16 | Nonlinear mixed-effects models [364.4s]
-────────────────────────────────────────────────────────────────────────────────
-Skip ('test_mixed.R:80:3'): saemix results are reproducible for biphasic fits
-Reason: Fitting with saemix takes around 10 minutes when using deSolve
-
-Skip ('test_mixed.R:133:3'): SFO-SFO saemix specific analytical solution work
-Reason: This is seldom used, so save some time
-────────────────────────────────────────────────────────────────────────────────
+✔ | 4 | Calculation of FOCUS chi2 error levels
+✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
+✔ | 4 | Test fitting the decline of metabolites from their maximum
+✔ | 1 | Fitting the logistic model
+✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [46.9s]
+✔ | 2 16 | Nonlinear mixed-effects models [399.6s]
✔ | 3 | Test dataset classes mkinds and mkindsg
-✔ | 10 | Special cases of mkinfit calls [0.4s]
-✔ | 3 | mkinfit features [0.7s]
-✔ | 8 | mkinmod model generation and printing [0.2s]
-✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 12 | Multistart method for saem.mmkin models [80.2s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.0s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [9.1s]
+✔ | 10 | Special cases of mkinfit calls
+✔ | 3 | mkinfit features
+✔ | 8 | mkinmod model generation and printing
+✔ | 3 | Model predictions with mkinpredict
+✔ | 12 | Multistart method for saem.mmkin models [50.1s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.8s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [9.3s]
✔ | 15 | Plotting [10.9s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [77.0s]
-────────────────────────────────────────────────────────────────────────────────
-Skip ('test_saemix_parent.R:143:3'): We can also use mkin solution methods for saem
-Reason: This still takes almost 2.5 minutes although we do not solve ODEs
-────────────────────────────────────────────────────────────────────────────────
+✔ | 1 36 | saemix parent models [68.4s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.2s]
✔ | 11 | Processing of residue series
-✔ | 10 | Fitting the SFORB model [3.5s]
+✔ | 10 | Fitting the SFORB model [3.8s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 5 | Summary [0.2s]
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.8s]
-✔ | 9 | Hypothesis tests [6.7s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.0s]
+✔ | 5 | Summary
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.9s]
+✔ | 9 | Hypothesis tests [6.4s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [1.4s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 656.7 s
+Duration: 655.6 s
-── Skipped tests ──────────────────────────────────────────────────────────────
-• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
-• Fitting with saemix takes around 10 minutes when using deSolve (1)
-• This is seldom used, so save some time (1)
-• This still takes almost 2.5 minutes although we do not solve ODEs (1)
+── Skipped tests (4) ───────────────────────────────────────────────────────────
+• Fitting this ODE model with saemix takes about 15 minutes on my system (1):
+ 'test_dmta.R:88:3'
+• Fitting with saemix takes around 10 minutes when using deSolve (1):
+ 'test_mixed.R:80:3'
+• This is seldom used, so save some time (1): 'test_mixed.R:133:3'
+• This still takes almost 2.5 minutes although we do not solve ODEs (1):
+ 'test_saemix_parent.R:143:3'
[ FAIL 0 | WARN 0 | SKIP 4 | PASS 281 ]

Contact - Imprint