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authorJohannes Ranke <jranke@uni-bremen.de>2022-11-16 14:51:17 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-11-16 14:51:17 +0100
commit78d421dc463dbfb993e372073c8de406d1f45da7 (patch)
tree43631cf7f8263bcf2e6bb33d77d4023f5a0278db /log/test.log
parent80ae27dcc4186f03e17164be74158454651474e7 (diff)
Update DESCRIPTION and NEWS, check and test
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log36
1 files changed, 18 insertions, 18 deletions
diff --git a/log/test.log b/log/test.log
index eb8d6b9a..b305bf58 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,22 +1,22 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.7s]
+✔ | 5 | Analytical solutions for coupled models [3.5s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.1s]
-✔ | 1 12 | Dimethenamid data from 2018 [37.5s]
+✔ | 1 12 | Dimethenamid data from 2018 [34.5s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_dmta.R:98'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [5.5s]
+✔ | 14 | Error model fitting [5.3s]
✔ | 5 | Time step normalisation
-✔ | 4 | Calculation of FOCUS chi2 error levels [0.7s]
-✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.9s]
+✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
+✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
-✔ | 1 | Fitting the logistic model [0.3s]
-✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [27.2s]
+✔ | 1 | Fitting the logistic model [0.2s]
+✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [25.6s]
✔ | 1 12 | Nonlinear mixed-effects models [0.4s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_mixed.R:74'): saemix results are reproducible for biphasic fits
@@ -24,30 +24,30 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ | 3 | Test dataset classes mkinds and mkindsg
✔ | 10 | Special cases of mkinfit calls [0.6s]
-✔ | 3 | mkinfit features [0.8s]
+✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 9 | Multistart method for saem.mmkin models [45.7s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.7s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [10.3s]
-✔ | 16 | Plotting [11.4s]
+✔ | 9 | Multistart method for saem.mmkin models [40.2s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.6s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [9.5s]
+✔ | 16 | Plotting [10.5s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [75.4s]
+✔ | 1 36 | saemix parent models [69.8s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
────────────────────────────────────────────────────────────────────────────────
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.6s]
✔ | 11 | Processing of residue series
-✔ | 10 | Fitting the SFORB model [4.2s]
+✔ | 10 | Fitting the SFORB model [3.9s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.5s]
-✔ | 9 | Hypothesis tests [9.6s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3s]
+✔ | 9 | Hypothesis tests [8.5s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 245.9 s
+Duration: 225.9 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

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