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authorJohannes Ranke <jranke@uni-bremen.de>2023-02-13 05:19:08 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2023-02-13 05:19:08 +0100
commit8d1a84ac2190538ed3bac53a303064e281595868 (patch)
treeacb894d85ab7ec87c4911c355a5264a77e08e34b /log/test.log
parent51d63256a7b3020ee11931d61b4db97b9ded02c0 (diff)
parent4200e566ad2600f56bc3987669aeab88582139eb (diff)
Merge branch 'main' into custom_lsoda_call
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log58
1 files changed, 29 insertions, 29 deletions
diff --git a/log/test.log b/log/test.log
index 10c0aa76..dc1b6c74 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,57 +1,57 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [2.9s]
+✔ | 5 | Analytical solutions for coupled models [1.6s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
-✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [29.5s]
+✔ | 12 | Confidence intervals and p-values [0.4s]
+✔ | 1 12 | Dimethenamid data from 2018 [12.4s]
────────────────────────────────────────────────────────────────────────────────
-Skip ('test_dmta.R:99'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
+Skip ('test_dmta.R:98'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [4.9s]
+✔ | 14 | Error model fitting [2.3s]
✔ | 5 | Time step normalisation
-✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
-✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7s]
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
-✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [24.7s]
-✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
+✔ | 4 | Calculation of FOCUS chi2 error levels [0.3s]
+✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.4s]
+✔ | 4 | Test fitting the decline of metabolites from their maximum [0.2s]
+✔ | 1 | Fitting the logistic model [0.1s]
+✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.1s]
+✔ | 1 11 | Nonlinear mixed-effects models [5.9s]
────────────────────────────────────────────────────────────────────────────────
-Skip ('test_mixed.R:74'): saemix results are reproducible for biphasic fits
+Skip ('test_mixed.R:78'): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ | 3 | Test dataset classes mkinds and mkindsg
-✔ | 10 | Special cases of mkinfit calls [0.5s]
-✔ | 3 | mkinfit features [0.7s]
-✔ | 8 | mkinmod model generation and printing [0.2s]
-✔ | 3 | Model predictions with mkinpredict [0.4s]
-✔ | 7 | Multistart method for saem.mmkin models [36.8s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.5s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.8s]
-✔ | 16 | Plotting [10.0s]
+✔ | 10 | Special cases of mkinfit calls [0.4s]
+✔ | 3 | mkinfit features [0.5s]
+✔ | 8 | mkinmod model generation and printing
+✔ | 3 | Model predictions with mkinpredict [0.1s]
+✔ | 12 | Multistart method for saem.mmkin models [21.6s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [3.7s]
+✔ | 15 | Plotting [4.6s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [66.1s]
+✔ | 1 36 | saemix parent models [30.9s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
────────────────────────────────────────────────────────────────────────────────
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.1s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [0.6s]
✔ | 11 | Processing of residue series
-✔ | 10 | Fitting the SFORB model [3.4s]
+✔ | 10 | Fitting the SFORB model [1.7s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 5 | Summary [0.2s]
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.6s]
-✔ | 9 | Hypothesis tests [6.1s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
+✔ | 5 | Summary
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [0.9s]
+✔ | 9 | Hypothesis tests [3.3s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [0.7s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 206.2 s
+Duration: 113.6 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
• This still takes almost 2.5 minutes although we do not solve ODEs (1)
-[ FAIL 0 | WARN 0 | SKIP 3 | PASS 267 ]
+[ FAIL 0 | WARN 0 | SKIP 3 | PASS 270 ]

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