aboutsummaryrefslogtreecommitdiff
path: root/log/test.log
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2022-08-10 12:58:35 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-08-10 12:58:35 +0200
commit9e346fabe99de71b21ef085be102027cfa774910 (patch)
tree9d483ad1a103b51e55a6f0b68886a9d9c2af8a8c /log/test.log
parentbf8f22838eb2b414f0171a176873b4373d3a497f (diff)
Batch processing for hierarchical fits
- 'R/mhmkin.R': New method for performing multiple hierarchical mkin fits in one function call, optionally in parallel. - 'R/saem.R': 'logLik' and 'update' methods for 'saem.mmkin' objects. - 'R/illparms.R': Add methods for 'saem.mmkin' and 'mhmkin' objects. tests: Use 2 cores on travis, should work according to docs
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log21
1 files changed, 11 insertions, 10 deletions
diff --git a/log/test.log b/log/test.log
index 67ba8841..8be4a512 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,11 +1,11 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.3s]
+✔ | 5 | Analytical solutions for coupled models [3.4s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [32.9s]
+✔ | 1 12 | Dimethenamid data from 2018 [32.4s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
@@ -16,6 +16,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
+✔ | 5 | Batch fitting and diagnosing hierarchical kinetic models [14.5s]
✔ | 1 12 | Nonlinear mixed-effects models [0.2s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits
@@ -27,23 +28,23 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 8 | mkinmod model generation and printing [0.2s]
✔ | 3 | Model predictions with mkinpredict [0.4s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s]
-✔ | 16 | Plotting [10.6s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.7s]
+✔ | 16 | Plotting [10.1s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 28 | saemix parent models [182.2s]
+✔ | 28 | saemix parent models [181.2s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
-✔ | 7 | Fitting the SFORB model [3.9s]
+✔ | 7 | Fitting the SFORB model [3.7s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
-✔ | 9 | Hypothesis tests [7.7s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
+✔ | 9 | Hypothesis tests [7.8s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 266.8 s
+Duration: 279.6 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
-[ FAIL 0 | WARN 0 | SKIP 2 | PASS 228 ]
+[ FAIL 0 | WARN 0 | SKIP 2 | PASS 233 ]

Contact - Imprint