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authorJohannes Ranke <jranke@uni-bremen.de>2022-12-15 14:50:28 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-12-15 14:50:28 +0100
commita54bd290bc3884d0000c52c1b29bc557825d9eae (patch)
tree841dc41b03035677aac0b288bca4927a0bd18582 /log/test.log
parent7c8b3db180be371cb03b9518f14117060fbc4239 (diff)
List random effects correlations in output if any
Update docs
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log20
1 files changed, 10 insertions, 10 deletions
diff --git a/log/test.log b/log/test.log
index 89265100..dc1b6c74 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,11 +1,11 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [1.5s]
+✔ | 5 | Analytical solutions for coupled models [1.6s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [0.4s]
-✔ | 1 12 | Dimethenamid data from 2018 [12.3s]
+✔ | 1 12 | Dimethenamid data from 2018 [12.4s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_dmta.R:98'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
@@ -16,23 +16,23 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.4s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.2s]
✔ | 1 | Fitting the logistic model [0.1s]
-✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [18.2s]
-✔ | 1 11 | Nonlinear mixed-effects models [5.8s]
+✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.1s]
+✔ | 1 11 | Nonlinear mixed-effects models [5.9s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_mixed.R:78'): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ | 3 | Test dataset classes mkinds and mkindsg
✔ | 10 | Special cases of mkinfit calls [0.4s]
-✔ | 3 | mkinfit features [0.4s]
+✔ | 3 | mkinfit features [0.5s]
✔ | 8 | mkinmod model generation and printing
✔ | 3 | Model predictions with mkinpredict [0.1s]
-✔ | 12 | Multistart method for saem.mmkin models [20.6s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.4s]
+✔ | 12 | Multistart method for saem.mmkin models [21.6s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s]
✔ | 9 | Nonlinear mixed-effects models with nlme [3.7s]
-✔ | 15 | Plotting [4.7s]
+✔ | 15 | Plotting [4.6s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [30.6s]
+✔ | 1 36 | saemix parent models [30.9s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
@@ -47,7 +47,7 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [0.7s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 111.2 s
+Duration: 113.6 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

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