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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-13 03:51:22 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-14 14:46:18 +0200
commitb76e401a854021eaeda6f8ba262baf37b4ecfac2 (patch)
treeb3c80276c320080c239eb8508e86c9e06b526143 /log/test.log
parent37bd36fe8a75163cbf0f97cb7a0e2f7466a53617 (diff)
Select best fit from multistart, use in parhist
- Add 'best' and 'which.best' generics with methods for multistart objects - Per default, scale the parameters in parhist plots using the fit with the highest log likelihood.
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log26
1 files changed, 13 insertions, 13 deletions
diff --git a/log/test.log b/log/test.log
index 942ed50d..6cd9e6a8 100644
--- a/log/test.log
+++ b/log/test.log
@@ -5,18 +5,18 @@
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [31.6s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.1s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [5.0s]
+✔ | 14 | Error model fitting [4.9s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
+✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.5s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.4s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits
@@ -26,23 +26,23 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 10 | Special cases of mkinfit calls [0.4s]
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
-✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s]
-✔ | 16 | Plotting [9.7s]
+✔ | 3 | Model predictions with mkinpredict [0.4s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s]
+✔ | 16 | Plotting [9.8s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 35 | saemix parent models [191.8s]
+✔ | 35 | saemix parent models [189.7s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
✔ | 11 | Processing of residue series
-✔ | 7 | Fitting the SFORB model [3.8s]
+✔ | 7 | Fitting the SFORB model [3.6s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
✔ | 9 | Hypothesis tests [7.8s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 288.9 s
+Duration: 286.0 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

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